comprna / RATTLE
Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
☆57Updated last year
Alternatives and similar repositories for RATTLE:
Users that are interested in RATTLE are comparing it to the libraries listed below
- Error correction of ONT transcript reads☆58Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last month
- ☆47Updated 7 months ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated last year
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- UCSC Nanopore☆43Updated 5 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Pipeline to convert a haploid assembly into diploid☆100Updated 2 months ago
- Methylation Phasing for Nanopore Sequencing☆47Updated 2 years ago
- Set of tools to manipulate and visualize modified base bam files☆52Updated 2 years ago
- Fast and accurate coordinate conversion between assemblies☆112Updated this week
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆92Updated last month
- ☆47Updated 4 months ago
- ☆29Updated 4 years ago
- Simple pileup-based variant caller☆87Updated last month
- Nanopore raw signal repeat detection pipeline☆45Updated 2 years ago
- ☆37Updated last week
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆100Updated 3 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆113Updated 3 months ago
- PHAST☆72Updated this week
- Snakemake pipelines for nanopore sequencing data archiving and processing☆89Updated 3 years ago
- Somatic structural variant caller for long-read data☆62Updated 3 weeks ago
- ☆77Updated last month
- Collection of tools for the analysis of CpG data☆80Updated last month
- perSVade: personalized Structural Variation detection☆38Updated last month
- A program for assessing the T2T genome continuity☆70Updated 3 weeks ago
- ☆61Updated last week
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- Call select base modifications in PacBio HiFi reads☆4Updated last month
- Variant calling tool for long-read sequencing data☆105Updated last week