comprna / RATTLELinks
Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
☆59Updated last year
Alternatives and similar repositories for RATTLE
Users that are interested in RATTLE are comparing it to the libraries listed below
Sorting:
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Methylation Phasing for Nanopore Sequencing☆49Updated 2 years ago
- A local-haplotagging-based small and structural variant caller☆92Updated this week
- A python program to call methylation (m6A in DNA) from nanopore signal data☆47Updated 4 years ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆118Updated last month
- PhyloAcc a software to detect the changes of conservation of a genomic region☆34Updated 2 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆36Updated last year
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆71Updated 3 years ago
- Structural variant caller for real-time long-read sequencing data☆61Updated 3 years ago
- ☆52Updated 3 months ago
- ☆83Updated last year
- Long Reads Annotation pipeline☆72Updated 3 years ago
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆34Updated last month
- Set of tools to manipulate and visualize modified base bam files☆58Updated 3 years ago
- Copy number caller for long read data including SNV utilization☆68Updated 9 months ago
- PHAST☆78Updated last week
- Variant calling tool for long-read sequencing data☆116Updated 10 months ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 5 years ago
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆60Updated 10 months ago
- Fast and accurate coordinate conversion between assemblies☆118Updated 3 months ago
- ☆49Updated last year
- Visualise and analyse nanopore (ONT) raw signals☆126Updated last month
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated 3 months ago
- ☆30Updated 4 years ago
- Research release basecalling models and configurations☆117Updated 7 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- ☆78Updated 5 years ago
- perSVade: personalized Structural Variation detection☆40Updated 4 months ago
- Toolkit for calling structural variants using short or long reads☆115Updated this week