Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
☆60Feb 15, 2024Updated 2 years ago
Alternatives and similar repositories for RATTLE
Users that are interested in RATTLE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Error correction of ONT transcript reads☆58Sep 6, 2023Updated 2 years ago
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- ☆49Mar 19, 2023Updated 3 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Jul 7, 2020Updated 5 years ago
- Version II of Mandalorion☆32Feb 1, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ORF Quantification pipeline for Alternative Splicing☆16May 11, 2021Updated 5 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆67Oct 11, 2024Updated last year
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated 2 years ago
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆229Updated this week
- Technology agnostic long read analysis pipeline for transcriptomes☆159Jan 25, 2024Updated 2 years ago
- Long-read splice alignment with high accuracy☆64Sep 26, 2024Updated last year
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆27Mar 9, 2026Updated 3 months ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆73Jan 31, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Scoring GT/AG sites for improving spliced alignment☆55Nov 10, 2025Updated 7 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated 2 months ago
- Analysis components from Oxford Nanopore Research☆98Apr 9, 2026Updated 2 months ago
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆48Oct 16, 2020Updated 5 years ago
- ☆16Apr 16, 2026Updated last month
- reference-free transcriptome assembly for short and long reads☆109Mar 13, 2026Updated 3 months ago
- Full-Length Alternative Isoform analysis of RNA☆253May 19, 2026Updated 3 weeks ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 7 years ago
- long read RNA-seq quantification☆112Jun 7, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆27May 9, 2024Updated 2 years ago
- BESST - scaffolder for genomic assemblies☆58Jul 6, 2023Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆40Mar 25, 2025Updated last year
- Genome alignment and synteny plots☆35Mar 24, 2026Updated 2 months ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- A genome-scale, fast, and precise segmental duplications mapping tool☆36Sep 11, 2024Updated last year
- Constructing a pangenome gene graph☆207Aug 11, 2025Updated 10 months ago
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- Long Reads Annotation pipeline☆72Mar 31, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Python library to visualize and analyze long-read transcriptomes☆69Jan 19, 2026Updated 4 months ago
- ☆67Apr 9, 2024Updated 2 years ago
- Structural variant caller for low-depth long-read sequencing data☆49Feb 5, 2026Updated 4 months ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Apr 2, 2020Updated 6 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆211Nov 18, 2022Updated 3 years ago
- ☆37Mar 17, 2026Updated 2 months ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 6 months ago