comprna / RATTLE
Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
☆57Updated last year
Alternatives and similar repositories for RATTLE:
Users that are interested in RATTLE are comparing it to the libraries listed below
- Error correction of ONT transcript reads☆59Updated last year
- ☆46Updated 3 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆88Updated 3 years ago
- ☆48Updated 5 months ago
- Pipeline to convert a haploid assembly into diploid☆96Updated 3 weeks ago
- Simple pileup-based variant caller☆86Updated 10 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆111Updated 2 months ago
- ☆35Updated 3 weeks ago
- Nanopore raw signal repeat detection pipeline☆45Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 months ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆99Updated 3 years ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated last year
- A list of software for pangenomics☆100Updated this week
- Fast and accurate coordinate conversion between assemblies☆112Updated 4 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆73Updated 2 months ago
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆71Updated this week
- Methylation Phasing for Nanopore Sequencing☆46Updated last year
- UCSC Nanopore☆43Updated 5 years ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆55Updated last year
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 4 years ago
- Set of tools to manipulate and visualize modified base bam files☆50Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆58Updated 4 months ago
- Somatic structural variant caller for long-read data☆60Updated this week
- Same species annotation lift over pipeline.☆96Updated last year
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated 11 months ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- Collection of tools for the analysis of CpG data☆77Updated 2 weeks ago
- Toolkit for calling structural variants using short or long reads☆100Updated 3 weeks ago