a long-read error correction tool using the multi-string Burrows Wheeler Transform
☆45Jul 7, 2020Updated 5 years ago
Alternatives and similar repositories for fmlrc
Users that are interested in fmlrc are comparing it to the libraries listed below
Sorting:
- Incremental construction of FM-index for DNA sequences☆72Jun 12, 2024Updated last year
- BESST - scaffolder for genomic assemblies☆58Jul 6, 2023Updated 2 years ago
- A python toolkit for building and querying multi-string BWTs☆27Mar 2, 2017Updated 9 years ago
- ☆49Mar 19, 2023Updated 3 years ago
- Error correction for Oxford Nanopore data☆47May 29, 2021Updated 4 years ago
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Mar 10, 2026Updated last week
- ☆10Jun 9, 2020Updated 5 years ago
- finshingTool☆54Nov 22, 2016Updated 9 years ago
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Sep 27, 2018Updated 7 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Aug 15, 2018Updated 7 years ago
- recompute GFA link overlaps☆25Sep 14, 2022Updated 3 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Mar 3, 2025Updated last year
- A fast tool for hybrid genome assembly of long and short reads☆78Apr 22, 2020Updated 5 years ago
- Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"☆64Oct 15, 2020Updated 5 years ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆108Jan 17, 2026Updated 2 months ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Sep 1, 2020Updated 5 years ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Mar 17, 2016Updated 10 years ago
- Read error correction tool for PacBio data☆12Dec 11, 2024Updated last year
- An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.☆45Nov 25, 2022Updated 3 years ago
- Identifying repeats in high-throughput sequencing data☆16Apr 12, 2024Updated last year
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆54Feb 6, 2024Updated 2 years ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆73Mar 13, 2026Updated last week
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Aug 1, 2025Updated 7 months ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆45Feb 17, 2021Updated 5 years ago
- Pipeline to convert a haploid assembly into diploid☆111Jan 23, 2025Updated last year
- ☆62Sep 15, 2025Updated 6 months ago
- A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…☆67Jul 23, 2020Updated 5 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 4 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Feb 23, 2021Updated 5 years ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Mar 21, 2024Updated 2 years ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆531Sep 27, 2023Updated 2 years ago
- Yet Another Chimeric Read Detector☆85Nov 7, 2024Updated last year
- The MafFilter genome alignment processor☆19Jan 6, 2026Updated 2 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated last year
- Noise-Cancelling Repeat Finder☆27Apr 11, 2023Updated 2 years ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆60Feb 15, 2024Updated 2 years ago
- TGS scaffolding☆47Nov 19, 2021Updated 4 years ago