holtjma / fmlrc
a long-read error correction tool using the multi-string Burrows Wheeler Transform
☆45Updated 4 years ago
Alternatives and similar repositories for fmlrc:
Users that are interested in fmlrc are comparing it to the libraries listed below
- UCSC Nanopore☆43Updated 5 years ago
- TGS scaffolding☆46Updated 3 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆55Updated 2 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 4 months ago
- An easy way to run BioNano genomic analysis☆27Updated 4 years ago
- ☆79Updated 2 months ago
- Evaluate variant calls and its combination with k-mer multiplicity☆66Updated 2 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆55Updated last year
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated 2 years ago
- finshingTool☆55Updated 8 years ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆38Updated 4 years ago
- ☆76Updated 4 years ago
- A program to call variants from genome alignment☆80Updated last week
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- ☆43Updated 8 years ago
- A tool for evaluate long-read de novo assembly results☆46Updated 8 months ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- PacBio hybrid error correction through iterative short read consensus☆61Updated 5 years ago
- Call select base modifications in PacBio HiFi reads☆7Updated 3 months ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- ☆47Updated 4 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆100Updated 3 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆55Updated last year
- Error correction of ONT transcript reads☆58Updated last year
- Simple pileup-based variant caller☆89Updated 2 weeks ago
- A tool for Racon polishing of miniasm assemblies☆74Updated 4 years ago
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆31Updated last year
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆72Updated 4 years ago
- Large genome reassembly based on Hi-C data, continuation of GRAAL☆41Updated last year