holtjma / fmlrcLinks
a long-read error correction tool using the multi-string Burrows Wheeler Transform
☆45Updated 5 years ago
Alternatives and similar repositories for fmlrc
Users that are interested in fmlrc are comparing it to the libraries listed below
Sorting:
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 3 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 4 years ago
- H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)☆73Updated 5 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆53Updated 2 years ago
- ☆84Updated 11 months ago
- ☆49Updated last year
- ☆46Updated 5 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆47Updated 7 years ago
- A fast tool for hybrid genome assembly of long and short reads☆78Updated 5 years ago
- UCSC Nanopore☆44Updated 6 years ago
- ☆68Updated last week
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆105Updated 4 years ago
- Methylation Phasing for Nanopore Sequencing☆49Updated 2 years ago
- Genome Pair Rapid Dotter☆67Updated 4 years ago
- HMM-HDP models for MinION signal alignments☆46Updated 8 years ago
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆34Updated last year
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40Updated 5 years ago
- Tools and software library developed by the ONT Applications group☆64Updated 5 years ago
- Code for phasing SVs with SNPs☆54Updated 5 years ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 5 years ago
- ☆51Updated last year
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆60Updated last year
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆64Updated 5 years ago
- Structural variant caller☆55Updated 4 years ago
- 🔗Genome assembly scaffolder using minimizer graphs☆85Updated last year
- Visualize whole genome alignments as linear maps☆74Updated 2 weeks ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆54Updated 11 months ago