elsiklab / sashimiplotView external linksLinks
A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data
☆14Apr 30, 2021Updated 4 years ago
Alternatives and similar repositories for sashimiplot
Users that are interested in sashimiplot are comparing it to the libraries listed below
Sorting:
- JBrowse 1.x Plugin Registry☆14Sep 10, 2023Updated 2 years ago
- Library for visualising genomic features in Python.☆15May 12, 2017Updated 8 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Jan 21, 2026Updated 3 weeks ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Oct 22, 2025Updated 3 months ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Apr 10, 2023Updated 2 years ago
- Allele-specific copy number estimation with whole genome sequencing☆23Nov 10, 2023Updated 2 years ago
- A JBrowse 1 plugin to view multiple alignment format (MAF) files☆27Oct 25, 2023Updated 2 years ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated 8 months ago
- ☆11Mar 10, 2024Updated last year
- Intelligent and cost-effective bidding on cloud computing instances for bioinformatics pipelines.☆13Dec 8, 2017Updated 8 years ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆12Jun 13, 2025Updated 8 months ago
- A flexible python program for generating figures from regions of the genome.☆13Apr 6, 2019Updated 6 years ago
- Process Illumina instrument data into SAM/BAM/CRAM files.☆10Jan 5, 2026Updated last month
- A dotplot application for DNA/RNA sequence☆11Nov 28, 2022Updated 3 years ago
- Analyzes whole genome sequencing data for gene-editing verification☆10Feb 6, 2026Updated last week
- supplementary tables and files☆10Oct 13, 2023Updated 2 years ago
- Client to access ExperimentHub resources☆11Oct 30, 2025Updated 3 months ago
- localised duplicate detection on patterned flow cells☆10Feb 27, 2019Updated 6 years ago
- JBrowse plugin that supports smallRNA alignments☆12Apr 8, 2019Updated 6 years ago
- All kinds of NGS analysis pipeline☆12Oct 10, 2019Updated 6 years ago
- ☆10Jun 21, 2015Updated 10 years ago
- Just another minhash implementation.☆12Updated this week
- This is the repository accompanying the pre-print titled, "Genome-wide analyses of 200,453 individuals yield new insights into the causes…☆13Jun 9, 2022Updated 3 years ago
- Fast Approximate Pattern Matching using Search Schemes☆16Jan 14, 2026Updated last month
- De novo genome assembler.☆11Jul 30, 2018Updated 7 years ago
- Unfazed by genomic variant phasing☆27May 26, 2024Updated last year
- Comparison of Adaptive Immune Receptor Repertoires☆28Jan 29, 2025Updated last year
- Interactive visulizations for track-based genomic data in R☆15Sep 9, 2024Updated last year
- Forensic analysis tool useful in backwards computing information from next-generation sequencing data.☆11Jan 20, 2026Updated 3 weeks ago
- ☆12Sep 29, 2023Updated 2 years ago
- A tissue-specific single-cell biological age model☆13Jul 26, 2023Updated 2 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- Multiple sequence alignment browser☆11Dec 12, 2022Updated 3 years ago
- Tejaas - a tool for discovering trans-eQTLs☆11Oct 14, 2022Updated 3 years ago
- MetaSRA: normalized sample-specific metadata for the Sequence Read Archive☆45Nov 24, 2025Updated 2 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Jun 27, 2020Updated 5 years ago
- Yet Another Motif Discovery Algorithm☆53Jan 10, 2019Updated 7 years ago
- Detecting Sequence Signals in Targeting Peptides Using Deep Learning☆14Sep 5, 2019Updated 6 years ago
- MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs)☆14Dec 7, 2016Updated 9 years ago