elsiklab / sashimiplotLinks
A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data
☆14Updated 4 years ago
Alternatives and similar repositories for sashimiplot
Users that are interested in sashimiplot are comparing it to the libraries listed below
Sorting:
- CLI to automate Nextflow pipeline testing☆12Updated last month
- Bedfile perturbation tool☆17Updated last week
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 5 months ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- ☆11Updated 2 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Updated 4 years ago
- ☆14Updated last month
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated this week
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 7 months ago
- Toolkit for calling and analyzing de novo STR mutations☆14Updated last year
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆23Updated 7 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆31Updated 8 months ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Rapid and accurate ancestry inference using SNVs.☆26Updated last month
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆10Updated 3 years ago
- ☆14Updated 2 years ago
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Updated 3 months ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Two pass alignment for long reads☆22Updated 4 years ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆14Updated last year
- FREE Divergence Error-Correcting DNA Barcodes☆10Updated 7 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 10 months ago
- Unfazed by genomic variant phasing☆27Updated last year