rvolden / Mandalorion-Episode-II
Version II of Mandalorion
☆32Updated 6 years ago
Alternatives and similar repositories for Mandalorion-Episode-II:
Users that are interested in Mandalorion-Episode-II are comparing it to the libraries listed below
- ☆21Updated 3 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 6 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 5 months ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆27Updated 3 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆39Updated this week
- Long-read Isoform Quantification and Analysis☆39Updated 2 months ago
- Long read to rMATS☆31Updated last year
- ☆28Updated 3 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆59Updated 5 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- ENCODE whole-genome bisulfite sequencing (WGBS) pipeline☆30Updated 3 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- ENCODE long read RNA-seq pipeline☆45Updated 2 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- Find and characterise transposable element insertions☆21Updated last year
- IDR☆31Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- ☆51Updated 5 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 6 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated last year
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆13Updated 11 months ago
- SingleCell Nanopore sequencing data analysis☆56Updated 3 months ago
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆20Updated last year
- Reconstruction of focal amplifications with long reads☆18Updated last week