Alternatives and similar repositories for libgtextutils

Users that are interested in libgtextutils are comparing it to the libraries listed below

• PacificBiosciences / pbbam
  PacBio BAM C++ library
  ☆20Updated 2 years ago
• IrinaVKuznetsova / CirGO
  ☆21Updated last year
• Xinglab / lr2rmats
  Long read to rMATS
  ☆32Updated 2 years ago
• friendsofstrandseq / mosaicatcher-pipeline
  Integrated workflow for SV calling from single-cell Strand-seq data
  ☆25Updated this week
• weng-lab / umitools
  A toolset for handling sequencing data with unique molecular identifiers (UMIs)
  ☆17Updated 7 years ago
• gzhmat / ShinyCNV
  a Shiny/R application to view and annotate copy number variations
  ☆28Updated 2 years ago
• chess-genome / chess
  Comprehensive Human Expressed SequenceS
  ☆19Updated 6 months ago
• AmpliconSuite / AmpliconReconstructorOM
  Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data
  ☆19Updated 2 years ago
• jcarrotzhang / LoLoPicker
  picking up low allelic-fraction, somatic variants from tumor samples
  ☆14Updated 8 years ago
• chrisamiller / copyCat
  a parallel R package for detecting copy-number alterations from short sequencing reads
  ☆23Updated 4 years ago
• KHP-Informatics / DNAscanv2
  DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…
  ☆14Updated last year
• homeveg / nuctools
  software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data
  ☆17Updated 6 years ago
• DecodeGenetics / LRS_SV_sets
  VCF files of SVs using long-read sequencing (LRS).
  ☆22Updated 4 years ago
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• NatPRoach / c_elegans_dRNAseq_analysis
  Scripts used in the analysis of C elegans dRNAseq data
  ☆14Updated last year
• epigen / open_pipelines
  Pipelines for NGS data preprocessing by the Bock lab and friends
  ☆22Updated 3 years ago
• bjpop / methpat
  A program for summarising CpG methylation patterns
  ☆20Updated 9 years ago
• bioinform / breakseq2
  BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants
  ☆25Updated 9 years ago
• WGLab / SeqMule
  Automated human exome/genome variants detection from FASTQ files
  ☆23Updated 4 years ago
• ajank / balancer-paper
  Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…
  ☆10Updated 6 years ago
• DyogenIBENS / FINSURF
  FINSURF is a tool designed to analyse lists of sequences variants in the human genome.
  ☆12Updated 3 years ago
• 4dn-dcic / pairsqc
  QC report generator for Hi-C pairs file
  ☆13Updated 5 years ago
• biosinodx / SCcaller
  Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data
  ☆35Updated last year
• KChen-lab / Texomer
  Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data
  ☆21Updated 5 years ago
• ImperialCardioGenetics / uORFs
  ☆18Updated 5 years ago
• rhshah / iCallSV
  A Framework to call Structural Variants from NGS based datasets
  ☆22Updated 8 years ago
• NYU-BFX / RNA-Seq_Standard
  ☆11Updated 7 years ago
• SouthGreenPlatform / PyRice
  PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a …
  ☆13Updated last year
• churchill-lab / g2gtools
  Personal diploid genome creation and coordinate conversion
  ☆30Updated 10 months ago
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆25Updated 7 years ago