WGLab / LIQALinks
Long-read Isoform Quantification and Analysis
☆38Updated 6 months ago
Alternatives and similar repositories for LIQA
Users that are interested in LIQA are comparing it to the libraries listed below
Sorting:
- ☆38Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 11 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- ENCODE long read RNA-seq pipeline☆50Updated 2 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- Long read to rMATS☆32Updated 2 years ago
- Improving gene isoform quantification with miniQuant☆29Updated last week
- ☆63Updated 2 weeks ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆50Updated 2 weeks ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- SingleCell Nanopore sequencing data analysis☆61Updated 4 months ago
- Reconstruction of focal amplifications with long reads☆22Updated 2 months ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated 5 months ago
- ☆35Updated last year
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- ⛏ HLA predictions from NGS shotgun data☆54Updated 4 months ago
- ☆20Updated 3 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated 2 months ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 5 months ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆42Updated last year
- ☆23Updated 9 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆43Updated 2 months ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆31Updated last year
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆67Updated 3 weeks ago
- Micro DNA identification☆24Updated 4 years ago
- ☆37Updated 6 years ago
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆32Updated 3 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated 3 weeks ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 7 months ago
- Error correction of ONT transcript reads☆58Updated 2 years ago