Long-read Isoform Quantification and Analysis
☆38Mar 25, 2025Updated last year
Alternatives and similar repositories for LIQA
Users that are interested in LIQA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Jun 13, 2020Updated 5 years ago
- Technology agnostic long read analysis pipeline for transcriptomes☆157Jan 25, 2024Updated 2 years ago
- A Python library to visualize and analyze long-read transcriptomes☆67Jan 19, 2026Updated 2 months ago
- Nanopore Real-Time Analysis Tool☆17Sep 4, 2024Updated last year
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆235Mar 27, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Analyse RNA feature distributions.☆19Dec 16, 2024Updated last year
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Jul 2, 2023Updated 2 years ago
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated 11 months ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆66Oct 11, 2024Updated last year
- Invertory of TE-gene isoforms☆14Sep 18, 2023Updated 2 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆262Updated this week
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- single-nucleus nanopore reads processing pipeline☆16Aug 16, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated last year
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Apr 29, 2024Updated last year
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 4 months ago
- Nanopanel2: a somatic variant caller for Nanopore panel sequencing data☆11Sep 21, 2021Updated 4 years ago
- ☆14Mar 13, 2018Updated 8 years ago
- Yet another Hi-C scaffolding tool☆22Oct 23, 2024Updated last year
- Full-Length Alternative Isoform analysis of RNA☆250Mar 30, 2026Updated last week
- Error correction of ONT transcript reads☆58Sep 6, 2023Updated 2 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Feb 7, 2023Updated 3 years ago
- Importing vg json graphs to Python data structures.☆12Nov 11, 2020Updated 5 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16May 17, 2022Updated 3 years ago
- JTK -- a regional diploid genome assembler☆26Oct 20, 2024Updated last year
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆127Mar 12, 2026Updated last month
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆279Sep 26, 2023Updated 2 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆23Apr 25, 2024Updated last year
- SUPPA: Fast quantification of splicing and differential splicing☆298Nov 6, 2025Updated 5 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- chloroplast genome assembly using long reads data☆16Jul 8, 2025Updated 9 months ago
- ☆42Feb 15, 2026Updated last month
- cDNA read preprocessing☆87Jul 25, 2024Updated last year
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆59Sep 6, 2025Updated 7 months ago
- ☆64Mar 19, 2026Updated 3 weeks ago
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated last year
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 7 years ago