smangul1 / good.softwareLinks
This is the GitHub repository for our recent study "A comprehensive analysis of the usability and archival stability of omics computational tools and resources." Please follow to the repository's wiki for more information and details on how this repository is connected to the paper.
☆22Updated 2 years ago
Alternatives and similar repositories for good.software
Users that are interested in good.software are comparing it to the libraries listed below
Sorting:
- Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads☆16Updated last year
- MetaSRA: normalized sample-specific metadata for the Sequence Read Archive☆45Updated 2 weeks ago
- A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries☆12Updated 5 years ago
- PaNeV: an R package for a pathway-based network visualization☆10Updated last month
- Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis☆23Updated this week
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆15Updated this week
- Materials for Spring 2019 Applied Genomics Course☆21Updated 6 years ago
- uORF-Tools are a workflow and a collection of tools for the analysis of 'Upstream Open Reading Frames' (short uORFs)☆13Updated 6 years ago
- A metadata commons to store research software metadata☆43Updated this week
- ☆22Updated last month
- Javascript package for embedding sequence logos☆16Updated 4 months ago
- draw sequence logos tailored to deep mutational scanning (DMS) data☆12Updated 2 years ago
- Proteomics label-free quantification (LFQ) analysis pipeline☆35Updated 9 months ago
- A python package for showing JBrowse views☆26Updated last year
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.☆26Updated last year
- ☆18Updated 5 years ago
- ☆19Updated 3 years ago
- Repository for the Anczukow-Lab splicing pipeline☆16Updated 7 months ago
- FREE Divergence Error-Correcting DNA Barcodes☆10Updated 7 years ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆35Updated last year
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated last year
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 3 years ago
- Project Manager for NGS data analysis☆30Updated 3 weeks ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 3 years ago
- A phenotype-based tool for variant prioritization in WES and WGS data☆38Updated 2 years ago
- An interactive learning resource for next-generation sequencing (NGS) techniques☆33Updated 7 years ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆36Updated 7 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated 2 months ago
- Workflow management with Nextflow and nf-core☆25Updated 9 months ago