This is the GitHub repository for our recent study "A comprehensive analysis of the usability and archival stability of omics computational tools and resources." Please follow to the repository's wiki for more information and details on how this repository is connected to the paper.
☆23Dec 8, 2022Updated 3 years ago
Alternatives and similar repositories for good.software
Users that are interested in good.software are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis☆13Sep 21, 2022Updated 3 years ago
- ☆15Aug 22, 2023Updated 2 years ago
- Improved Phased Assembler☆28Mar 11, 2022Updated 4 years ago
- ☆15Jun 24, 2017Updated 9 years ago
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Liftover VCF files☆19Dec 10, 2016Updated 9 years ago
- Access public biological ontologies.☆14Aug 7, 2024Updated last year
- ☆19Updated this week
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Oct 11, 2019Updated 6 years ago
- Repository with materials for the Speeding Up Science Workshops at UC Davis☆10Oct 31, 2019Updated 6 years ago
- ☆11Jun 29, 2014Updated 12 years ago
- materials for the workshop on UNIX command line☆13May 23, 2019Updated 7 years ago
- A comprehensive and intelligent clinical phasing tool☆14Dec 3, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- scRNA-seq Shiny App☆14May 1, 2023Updated 3 years ago
- Nanopanel2: a somatic variant caller for Nanopore panel sequencing data☆11Sep 21, 2021Updated 4 years ago
- A highly interactive single-cell bioinformatics workflow management library. Built with dataforest☆10Oct 4, 2022Updated 3 years ago
- Deduplication for cfDNA sequencing data☆11Jul 5, 2017Updated 8 years ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆16Feb 20, 2023Updated 3 years ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- ☆26Apr 2, 2026Updated 3 months ago
- Fork of the Polysolver project☆33Nov 21, 2019Updated 6 years ago
- Scotch pipeline for indel calling.☆10Nov 25, 2019Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆61Feb 15, 2024Updated 2 years ago
- Reproducible Research in Finse☆10Aug 5, 2020Updated 5 years ago
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Aug 1, 2014Updated 11 years ago
- The shiny app that accompanies the ngsReports R package☆14Jun 10, 2021Updated 5 years ago
- SparsePainter: fast, accurate and fine-scale chromosome painting software based on PBWT and HashMap☆19Feb 11, 2026Updated 4 months ago
- DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data☆27Mar 18, 2022Updated 4 years ago
- Genomics lessons for week 4 of the Microbial Diversity course at the Marine Biological Lab in Woods Hole, MA.☆21Aug 15, 2017Updated 8 years ago
- Noise-Cancelling Repeat Finder☆27Apr 2, 2026Updated 3 months ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆11Nov 21, 2025Updated 7 months ago
- metabCombiner R Package: Paired Untargeted Metabolomics Feature Matching & Data Concatenation☆13May 29, 2024Updated 2 years ago
- ☆21Jul 5, 2018Updated 7 years ago
- Nextflow implementation of the smoove workflow and other tools for SV calling and QC☆12Nov 12, 2020Updated 5 years ago
- Ten Simple Rules for Helping Newcomers Become Contributors to Open Source Projects☆47Nov 10, 2021Updated 4 years ago
- Genotyping of copy number sensitive allele-specific haplotypes☆28Jun 18, 2026Updated 2 weeks ago
- Distributed and cloud computing framework for vg☆23Apr 21, 2026Updated 2 months ago