TrinityCTAT / CTAT-LR-fusionLinks
fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector
☆20Updated 3 months ago
Alternatives and similar repositories for CTAT-LR-fusion
Users that are interested in CTAT-LR-fusion are comparing it to the libraries listed below
Sorting:
- Long-read Isoform Quantification and Analysis☆39Updated 2 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆60Updated 7 months ago
- Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu☆12Updated 2 weeks ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 7 months ago
- SingleCell Nanopore sequencing data analysis☆60Updated last week
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆59Updated 3 weeks ago
- Set of tools to manipulate and visualize modified base bam files☆56Updated 2 years ago
- ENCODE long read RNA-seq pipeline☆47Updated 2 years ago
- A Python library to visualize and analyze long-read transcriptomes☆62Updated last month
- ☆18Updated last month
- Reconstruction of focal amplifications with long reads☆21Updated last week
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆41Updated last month
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆44Updated 2 months ago
- Human reference genome analysis sets☆52Updated last year
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- The Flexible Demultiplexer☆30Updated 2 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- ☆61Updated 10 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆47Updated 5 years ago
- Annotation and segmentation of MAS-seq data☆20Updated 2 years ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Error correction of ONT transcript reads☆58Updated last year
- ☆22Updated 5 months ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆16Updated 3 months ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆39Updated 10 months ago
- ☆36Updated 2 years ago
- Immuological gene typing and annotation for genome assembly☆37Updated 2 months ago
- Digenome-toolkit ver2.☆16Updated 3 years ago