TrinityCTAT / CTAT-LR-fusionLinks
fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector
☆22Updated 2 months ago
Alternatives and similar repositories for CTAT-LR-fusion
Users that are interested in CTAT-LR-fusion are comparing it to the libraries listed below
Sorting:
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- ENCODE long read RNA-seq pipeline☆51Updated 2 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆69Updated last week
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆75Updated 3 weeks ago
- Somatic structural variant caller for long-read data☆84Updated 3 weeks ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- SingleCell Nanopore sequencing data analysis☆62Updated 6 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 8 months ago
- ☆63Updated 2 months ago
- Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu☆15Updated last month
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 9 months ago
- Reconstruction of focal amplifications with long reads☆23Updated last month
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 7 months ago
- Human reference genome analysis sets☆56Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated last month
- The Flexible Demultiplexer☆37Updated 2 months ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆59Updated 8 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 4 months ago
- Long-read splice alignment with high accuracy☆64Updated last year
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Updated last year
- Set of tools to manipulate and visualize modified base bam files☆58Updated 3 years ago
- ☆25Updated 7 months ago
- python plotly Circos from VCF☆40Updated last year
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆70Updated last year
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆36Updated this week
- ☆34Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Structural variant merging tool☆55Updated last year