TrinityCTAT / CTAT-LR-fusionLinks
fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector
☆22Updated last week
Alternatives and similar repositories for CTAT-LR-fusion
Users that are interested in CTAT-LR-fusion are comparing it to the libraries listed below
Sorting:
- ENCODE long read RNA-seq pipeline☆50Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 9 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 4 months ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆66Updated 4 months ago
- SingleCell Nanopore sequencing data analysis☆60Updated 2 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 9 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆63Updated 3 weeks ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Somatic structural variant caller for long-read data☆78Updated last month
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- ☆43Updated 10 months ago
- ☆39Updated last year
- The Flexible Demultiplexer☆33Updated this week
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆68Updated last year
- Set of tools to manipulate and visualize modified base bam files☆56Updated 3 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆46Updated 4 months ago
- QDNAseq package for Bioconductor☆50Updated last year
- Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu☆14Updated last month
- A Python library to visualize and analyze long-read transcriptomes☆62Updated 3 months ago
- Human reference genome analysis sets☆53Updated 2 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 5 months ago
- ☆62Updated last year
- Software for Quantifying Interspersed Repeat Expression☆60Updated 3 years ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆57Updated last month
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆45Updated 3 weeks ago
- python plotly Circos from VCF☆38Updated last year
- ☆36Updated 2 years ago
- Structural variant merging tool☆53Updated 11 months ago
- long read RNA-seq quantification☆89Updated last month