TrinityCTAT / CTAT-LR-fusionLinks
fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector
☆22Updated 2 weeks ago
Alternatives and similar repositories for CTAT-LR-fusion
Users that are interested in CTAT-LR-fusion are comparing it to the libraries listed below
Sorting:
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 9 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆62Updated 2 weeks ago
- SingleCell Nanopore sequencing data analysis☆60Updated last month
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 9 months ago
- ENCODE long read RNA-seq pipeline☆49Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 3 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- Somatic structural variant caller for long-read data☆71Updated last month
- Set of tools to manipulate and visualize modified base bam files☆56Updated 2 years ago
- Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu☆14Updated 3 weeks ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆44Updated last week
- A program for the analysis of single cell nanopore long read data☆19Updated 2 weeks ago
- ☆42Updated 10 months ago
- ☆39Updated last year
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆68Updated last year
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 5 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- A Python library to visualize and analyze long-read transcriptomes☆62Updated 2 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆31Updated last year
- ☆61Updated 11 months ago
- Error correction of ONT transcript reads☆58Updated last year
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆31Updated last week
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last week
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆46Updated 3 months ago
- ☆23Updated 6 months ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆40Updated 11 months ago
- Human reference genome analysis sets☆53Updated 2 years ago
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆32Updated this week
- ☆48Updated 10 months ago