mortazavilab / TALONLinks
Technology agnostic long read analysis pipeline for transcriptomes
☆149Updated last year
Alternatives and similar repositories for TALON
Users that are interested in TALON are comparing it to the libraries listed below
Sorting:
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆134Updated this week
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆156Updated 2 years ago
- Fast alignment and preprocessing of chromatin profiles☆203Updated last month
- A (mostly) universal methylation extractor for BS-seq experiments.☆173Updated last year
- Analysis of Chromosome Conformation Capture data (Hi-C)☆100Updated last month
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆69Updated last year
- ☆102Updated 3 weeks ago
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆176Updated this week
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆151Updated 3 weeks ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆236Updated this week
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆219Updated last month
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆116Updated last month
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆166Updated last year
- FEELnc : FlExible Extraction of LncRNA☆90Updated last month
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆117Updated 6 months ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆116Updated last month
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆29Updated 6 months ago
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- BAM Statistics, Feature Counting and Annotation☆149Updated last week
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆111Updated 4 years ago
- Allele-specific alignment sorting☆58Updated 2 years ago
- HiC uniform processing pipeline☆61Updated last year
- Detection of m6A from direct RNA-Seq data☆130Updated 3 months ago
- JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions☆98Updated 2 months ago
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- Publication quality NGS track plotting☆114Updated 3 years ago
- Check strandedness of RNA-Seq fastq files☆125Updated 2 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated last month
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆89Updated 3 years ago