Technology agnostic long read analysis pipeline for transcriptomes
☆160Jan 25, 2024Updated 2 years ago
Alternatives and similar repositories for TALON
Users that are interested in TALON are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆72Jan 31, 2024Updated 2 years ago
- A Python library to visualize and analyze long-read transcriptomes☆69Jan 19, 2026Updated 6 months ago
- Full-Length Alternative Isoform analysis of RNA☆254Jun 23, 2026Updated last month
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆251Updated this week
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆275Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆185Apr 12, 2023Updated 3 years ago
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆68Oct 11, 2024Updated last year
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆282Sep 26, 2023Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆40Mar 25, 2025Updated last year
- A universal toolkit for upstream processing of long RNA reads☆233Updated this week
- Identification of differential RNA modifications from nanopore direct RNA sequencing☆167Jul 17, 2026Updated last week
- ENCODE long read RNA-seq pipeline☆52Apr 13, 2026Updated 3 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆241Jun 24, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Jun 14, 2020Updated 6 years ago
- Visualizing transcript structure and annotation using ggplot2☆169Aug 24, 2024Updated last year
- ☆21Apr 20, 2026Updated 3 months ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆110Feb 7, 2023Updated 3 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆134Apr 10, 2026Updated 3 months ago
- ☆39Apr 25, 2023Updated 3 years ago
- Error correction of ONT transcript reads☆58Sep 6, 2023Updated 2 years ago
- IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.☆28Oct 6, 2023Updated 2 years ago
- ☆15Apr 26, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A tool to identify, orient, trim and rescue full length cDNA reads☆85Jul 4, 2022Updated 4 years ago
- ☆37Jun 26, 2026Updated 3 weeks ago
- SUPPA: Fast quantification of splicing and differential splicing☆306Nov 6, 2025Updated 8 months ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆80Mar 21, 2023Updated 3 years ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆276Jul 7, 2026Updated 2 weeks ago
- long read RNA-seq quantification☆116Updated this week
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆38Nov 8, 2023Updated 2 years ago
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated last year
- Derives consensus sequences from a set of long noisy reads by clustering and error correction.☆17Jul 20, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 3 years ago
- Version II of Mandalorion☆32Feb 1, 2019Updated 7 years ago
- Full-length transcriptome splicing and mutation analysis☆93Mar 23, 2026Updated 4 months ago
- ☆44Dec 29, 2025Updated 6 months ago
- cDNA read preprocessing☆95Jul 25, 2024Updated 2 years ago
- Nanopore demultiplexing, QC and alignment pipeline☆228Updated this week
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated 2 years ago