NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm
☆27May 9, 2024Updated 2 years ago
Alternatives and similar repositories for nanoreviser
Users that are interested in nanoreviser are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Apr 4, 2025Updated last year
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆43Feb 13, 2026Updated 2 months ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 11 months ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆55Feb 6, 2024Updated 2 years ago
- Functions to extract information from Oxford Nanopore sequencing data and alignments☆11Dec 4, 2025Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- fork of dorado that supports S/BLOW5☆12Jan 8, 2026Updated 4 months ago
- ☆10Jun 13, 2020Updated 5 years ago
- Error correction of ONT transcript reads☆58Sep 6, 2023Updated 2 years ago
- DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data☆27Mar 18, 2022Updated 4 years ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Sep 28, 2022Updated 3 years ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆171Mar 15, 2021Updated 5 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- ☆15Aug 22, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Nov 18, 2022Updated 3 years ago
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Apr 30, 2026Updated last week
- A FASTQ lossless compression algorithm especially designed for nanopore sequencing FASTQ files.☆10Jul 2, 2020Updated 5 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆24Feb 28, 2023Updated 3 years ago
- Splitting of sequence reads by internal adapter sequence search☆51May 30, 2023Updated 2 years ago
- slow5lib is a software library for reading & writing SLOW5 files.☆47Apr 17, 2026Updated 3 weeks ago
- Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warping for nanopore raw signal search (DSDTWnano) and the con…☆10Jul 13, 2020Updated 5 years ago
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆21Nov 20, 2022Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a sing…☆28May 10, 2020Updated 5 years ago
- ☆16Oct 10, 2023Updated 2 years ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆359Updated this week
- A tool to detect structural variant☆17Mar 27, 2023Updated 3 years ago
- SIMD partial order alignment tool/library☆180Sep 21, 2025Updated 7 months ago
- This repo is deprecated. Please use gfatools instead.☆15Aug 17, 2018Updated 7 years ago
- The gview wiki migrated to GitHub.☆11Sep 3, 2020Updated 5 years ago
- Interactive visualization of assembly graphs☆83Apr 2, 2022Updated 4 years ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆20May 14, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆16Apr 9, 2021Updated 5 years ago
- GBWT-based handle graph☆33Updated this week
- Detecting methylation using signal-level features from Nanopore sequencing reads☆118Jun 4, 2023Updated 2 years ago
- A streaming method for mapping nanopore raw signals☆32Nov 7, 2021Updated 4 years ago
- This repository contains FAQs (Frequently Asked Questions) for genome in a bottle project☆10Sep 28, 2018Updated 7 years ago
- Foreign Contamination Screening - GX source code☆27Jun 9, 2025Updated 10 months ago
- ☆26Dec 29, 2020Updated 5 years ago