pkubioinformatics / nanoreviserLinks
NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm
☆28Updated last year
Alternatives and similar repositories for nanoreviser
Users that are interested in nanoreviser are comparing it to the libraries listed below
Sorting:
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Updated 8 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- A tool for de novo clustering of long transcriptomic reads☆15Updated 3 years ago
- ☆49Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆53Updated 9 months ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆53Updated last year
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆41Updated last week
- Structural variant caller☆55Updated 4 years ago
- A simple tool for extracting reads from Oxford Nanopore fast5 files☆26Updated 8 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated 3 weeks ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Pan-Genomic Matching Statistics☆55Updated last year
- catalog for long-read sequencing tools☆32Updated 2 years ago
- ☆26Updated 6 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 3 months ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆21Updated 2 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- Generate unique KMERs for every contig in a FASTA file☆48Updated 3 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆37Updated this week
- A streaming method for mapping nanopore raw signals☆32Updated 4 years ago
- perSVade: personalized Structural Variation detection☆40Updated 3 months ago
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆14Updated 5 years ago