A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing
☆21Sep 19, 2021Updated 4 years ago
Alternatives and similar repositories for LongGF
Users that are interested in LongGF are comparing it to the libraries listed below
Sorting:
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Jan 16, 2026Updated last month
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Oct 5, 2021Updated 4 years ago
- JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions☆107Updated this week
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Dec 27, 2025Updated 2 months ago
- SARS-CoV-2 Deep Sequencing☆14Apr 22, 2020Updated 5 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Long Approximate Matches-based Split Aligner☆13Apr 6, 2017Updated 8 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Jan 10, 2017Updated 9 years ago
- Python bindings to minimap2☆16Sep 18, 2017Updated 8 years ago
- De Bruijn graph construction for large k.☆17Aug 31, 2021Updated 4 years ago
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 4 years ago
- ☆20Aug 18, 2020Updated 5 years ago
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆19Dec 9, 2020Updated 5 years ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆27Updated this week
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 2 months ago
- Two pass alignment for long reads☆22Mar 9, 2021Updated 4 years ago
- ☆27Apr 17, 2025Updated 10 months ago
- Scotch pipeline for indel calling.☆10Nov 25, 2019Updated 6 years ago
- Long-read Isoform Quantification and Analysis☆38Mar 25, 2025Updated 11 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆65Oct 11, 2024Updated last year
- linearize and simplify variation graphs using blocked partial order alignment☆60Updated this week
- De novo clustering of long transcript reads into genes☆70Apr 27, 2025Updated 10 months ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 2 years ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆12Jun 13, 2025Updated 8 months ago
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Nov 27, 2020Updated 5 years ago
- An alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome☆10Jan 25, 2019Updated 7 years ago
- ☆10Feb 14, 2022Updated 4 years ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated 8 months ago
- ☆10Sep 14, 2023Updated 2 years ago
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated last year
- Python-like decorator in Rust☆15May 14, 2020Updated 5 years ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- Sequencing analysis pipeline☆15Dec 12, 2025Updated 2 months ago
- ☆13Feb 18, 2026Updated last week
- Merging, Annotation, Validation, and Illustration of Structural variants☆75Aug 22, 2023Updated 2 years ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆49Sep 2, 2025Updated 5 months ago