WGLab / LongGF
A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing
☆21Updated 3 years ago
Alternatives and similar repositories for LongGF:
Users that are interested in LongGF are comparing it to the libraries listed below
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- ☆22Updated 4 months ago
- ☆16Updated last week
- Immuological gene typing and annotation for genome assembly☆35Updated last month
- GENE-SWitCH project RNA-Seq analysis pipeline☆25Updated 2 months ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆16Updated 5 years ago
- FINSURF is a tool designed to analyse lists of sequences variants in the human genome.☆12Updated 2 years ago
- Reconstruction of focal amplifications with long reads☆20Updated 3 weeks ago
- Automated Detection and Qualification of Differential Methylation☆13Updated last year
- Structural variant merging tool☆49Updated 8 months ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆31Updated 6 years ago
- ☆33Updated 2 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- Digenome-toolkit ver2.☆16Updated 3 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 2 weeks ago
- a lexicographically-based GTF/GFF sorter☆33Updated 8 months ago
- ☆23Updated 3 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆59Updated 6 months ago
- ☆18Updated 2 years ago
- Find and characterise transposable element insertions☆21Updated last year
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 7 months ago
- BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool☆21Updated 2 years ago
- toolkit to process gtf files☆17Updated 3 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆24Updated 11 months ago
- Two pass alignment for long reads☆22Updated 4 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Pipeline for Phylostratigraphy☆13Updated 2 years ago
- ☆20Updated last year
- Structural variant VCF annotation, duplicate removal and comparison☆31Updated 2 months ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago