WGLab / LongGF
A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing
☆21Updated 3 years ago
Alternatives and similar repositories for LongGF:
Users that are interested in LongGF are comparing it to the libraries listed below
- ☆21Updated 2 months ago
- Reconstruction of focal amplifications with long reads☆18Updated this week
- Long-read Isoform Quantification and Analysis☆39Updated last month
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆44Updated 4 months ago
- Master of Pores 2☆23Updated 2 months ago
- ☆14Updated 8 months ago
- ☆33Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆58Updated 4 months ago
- ☆30Updated 9 months ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 5 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆24Updated 9 months ago
- Integrative analysis of complex structural variants☆21Updated 4 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated 10 months ago
- FINSURF is a tool designed to analyse lists of sequences variants in the human genome.☆12Updated 2 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆34Updated 8 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated last week
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆16Updated 4 months ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool☆21Updated last year
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆31Updated 5 years ago
- Tools for processing and analyzing structural variants.☆32Updated 9 years ago
- Long read to rMATS☆31Updated last year
- Third-generation fusion gene detection☆14Updated last year
- Structural variant merging tool☆49Updated 6 months ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 3 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- ☆34Updated 5 months ago
- Fast and scalable variant annotation tool☆30Updated 2 years ago