WGLab / LongGFLinks
A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing
☆21Updated 3 years ago
Alternatives and similar repositories for LongGF
Users that are interested in LongGF are comparing it to the libraries listed below
Sorting:
- Reconstruction of focal amplifications with long reads☆21Updated last week
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last week
- FINSURF is a tool designed to analyse lists of sequences variants in the human genome.☆12Updated 2 years ago
- Immuological gene typing and annotation for genome assembly☆37Updated 3 months ago
- ☆19Updated 2 months ago
- ☆22Updated 6 months ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 7 years ago
- ☆36Updated 2 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆32Updated last year
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆34Updated 6 years ago
- Structural variant merging tool☆52Updated 10 months ago
- Human pan-genome analysis pipeline☆30Updated 5 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- Long-read Isoform Quantification and Analysis☆38Updated 3 months ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆16Updated 2 years ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆26Updated 4 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated last year
- toolkit to process gtf files☆17Updated 3 years ago
- Long read to rMATS☆31Updated 2 years ago
- Master of Pores 2☆23Updated 6 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 8 months ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- ☆19Updated 2 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated 10 months ago
- ☆21Updated 2 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 4 months ago
- Integrative analysis of complex structural variants☆21Updated 4 years ago