ksahlin / BESSTLinks
BESST - scaffolder for genomic assemblies
☆57Updated 2 years ago
Alternatives and similar repositories for BESST
Users that are interested in BESST are comparing it to the libraries listed below
Sorting:
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- Graph based multi genome aligner☆49Updated 4 years ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆59Updated 8 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆45Updated 2 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 4 years ago
- extract MSAs from genome variation graphs☆34Updated 5 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 9 years ago
- Haplotype-aware genome assembly toolkit☆30Updated 5 years ago
- A comparative genome scaffolding tool☆16Updated 7 years ago
- ♥ Efficient Estimation of Evolutionary Distances☆47Updated last year
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 4 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 7 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 2 months ago
- genomic alignment similarity search tool☆18Updated 6 months ago
- Find Unique genomic Regions☆32Updated last month
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- GAPPadder is tool for closing gaps on draft genomes with short sequencing data☆27Updated 8 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆45Updated 4 years ago
- Making diploid assembly becomes common practice for genomic study☆30Updated 8 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- Visualising discordant reads☆15Updated 10 years ago