ksahlin / BESSTLinks
BESST - scaffolder for genomic assemblies
☆57Updated 2 years ago
Alternatives and similar repositories for BESST
Users that are interested in BESST are comparing it to the libraries listed below
Sorting:
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆58Updated 8 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Find Unique genomic Regions☆30Updated last week
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 7 years ago
- extract MSAs from genome variation graphs☆33Updated 5 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Hitting associations with k-mers☆44Updated 3 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆45Updated 4 years ago
- This repository is deprecated, please use the link to the right.☆23Updated 6 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- ☆26Updated 5 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆42Updated 11 months ago
- ☆30Updated 2 years ago
- ♥ Efficient Estimation of Evolutionary Distances☆47Updated last year
- Making diploid assembly becomes common practice for genomic study☆30Updated 7 years ago
- Graph based multi genome aligner☆48Updated 4 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 2 weeks ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30Updated 7 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 4 years ago
- GAPPadder is tool for closing gaps on draft genomes with short sequencing data☆27Updated 8 years ago