fmfi-compbio / deepnano-blitzLinks
Very fast ONT basecaller
☆52Updated 3 years ago
Alternatives and similar repositories for deepnano-blitz
Users that are interested in deepnano-blitz are comparing it to the libraries listed below
Sorting:
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆69Updated 3 years ago
- H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)☆73Updated 5 years ago
- ☆49Updated last year
- A local-haplotagging-based small and structural variant caller☆90Updated last week
- ☆30Updated last year
- vcfdist: Accurately benchmarking phased variant calls☆84Updated 3 months ago
- Visualise and analyse nanopore (ONT) raw signals☆126Updated last week
- Pan-Genomic Matching Statistics☆55Updated last year
- A fast tool for hybrid genome assembly of long and short reads☆78Updated 5 years ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆59Updated last year
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 5 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated 3 months ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 4 years ago
- flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.☆37Updated 2 years ago
- ☆80Updated 11 months ago
- RNA modifications detection from Nanopore dRNA-Seq data☆87Updated 3 months ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- GUI for inspecting POD5 files☆34Updated last year
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆53Updated last year
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆80Updated 8 months ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Yet Another Chimeric Read Detector☆81Updated last year
- a tool for simulating nanopore raw signal data☆70Updated 2 months ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Updated 3 years ago
- PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores☆74Updated 2 years ago
- Pipeline to convert a haploid assembly into diploid☆108Updated 10 months ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆60Updated 6 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Updated last year