Very fast ONT basecaller
☆52Jun 17, 2022Updated 3 years ago
Alternatives and similar repositories for deepnano-blitz
Users that are interested in deepnano-blitz are comparing it to the libraries listed below
Sorting:
- Fast bird catching fishes AKA realtime very high accuracy CPU basecaller for Oxford nanopore reads.☆15Oct 6, 2021Updated 4 years ago
- Nanopore basecalling and consensus decoding☆46Jul 22, 2022Updated 3 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Aug 15, 2018Updated 7 years ago
- ☆12Apr 8, 2021Updated 4 years ago
- A long read simulator based on badread idea☆22Oct 7, 2022Updated 3 years ago
- Read Until client library for Nanopore Sequencing☆109Sep 25, 2024Updated last year
- PEPPER-Margin-DeepVariant☆257Jan 12, 2024Updated 2 years ago
- Complements Minimap2 for a fast and efficient Read-Until pipeline☆14Mar 21, 2023Updated 2 years ago
- ☆15Sep 26, 2019Updated 6 years ago
- CLI tool for flexible and fast adaptive sampling on ONT sequencers☆194Feb 25, 2026Updated last week
- A PyTorch Basecaller for Oxford Nanopore Reads☆429Feb 20, 2026Updated 2 weeks ago
- Error correction of ONT transcript reads☆58Sep 6, 2023Updated 2 years ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆18Aug 6, 2025Updated 7 months ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Jan 18, 2019Updated 7 years ago
- nPoRe: n-Polymer Realigner for improved pileup-based variant calling☆18Jul 11, 2022Updated 3 years ago
- SquiggleKit: A toolkit for manipulating nanopore signal data☆128Feb 16, 2024Updated 2 years ago
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- A comparison of different Oxford Nanopore basecallers☆316Aug 5, 2019Updated 6 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 2 months ago
- A tool to detect structural variant☆17Mar 27, 2023Updated 2 years ago
- Reference-free variant discovery in large eukaryotic genomes☆42Jul 13, 2021Updated 4 years ago
- A basecaller for Oxford Nanopore Technologies' sequencers☆121Jul 6, 2023Updated 2 years ago
- An Fast variant calling tool to detection germline and somatic variants☆11Feb 21, 2026Updated 2 weeks ago
- Just another minhash implementation.☆12Feb 25, 2026Updated last week
- ☆11Jul 3, 2022Updated 3 years ago
- Segmental Duplication Assembler (SDA).☆43May 7, 2023Updated 2 years ago
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆22Feb 10, 2019Updated 7 years ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆161Jan 29, 2026Updated last month
- A streaming method for mapping nanopore raw signals☆32Nov 7, 2021Updated 4 years ago
- Splitting of sequence reads by internal adapter sequence search☆51May 30, 2023Updated 2 years ago
- Ultra-efficient taxonomic mapping of NGS data☆51Mar 26, 2021Updated 4 years ago
- High-quality Nanopore-only genome polisher☆69Aug 16, 2024Updated last year
- Data and analysis for NA12878 genome on nanopore☆403Nov 22, 2022Updated 3 years ago
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Dec 30, 2019Updated 6 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.☆53Feb 25, 2026Updated last week
- Gene copy number prediction from k-mer frequencies☆15Jul 29, 2024Updated last year
- ☆49Nov 7, 2024Updated last year
- Long read to reference genome mapping tool☆13Mar 14, 2024Updated last year