fmfi-compbio / deepnano-blitz
Very fast ONT basecaller
☆53Updated 2 years ago
Alternatives and similar repositories for deepnano-blitz:
Users that are interested in deepnano-blitz are comparing it to the libraries listed below
- ☆28Updated last year
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Pan-Genomic Matching Statistics☆52Updated 11 months ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated last year
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆59Updated 5 years ago
- Visualise and analyse nanopore (ONT) raw signals☆113Updated 2 months ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆88Updated 3 years ago
- A tool for Racon polishing of miniasm assemblies☆74Updated 4 years ago
- Pipeline to convert a haploid assembly into diploid☆100Updated 2 months ago
- A local-haplotagging-based small and structural variant caller☆69Updated last week
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- GUI for inspecting POD5 files☆26Updated 3 months ago
- PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores☆72Updated last year
- vcfdist: Accurately benchmarking phased variant calls☆79Updated this week
- A fast tool for hybrid genome assembly of long and short reads☆77Updated 4 years ago
- Banded Striped DNA Sequence Alignment☆45Updated last year
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆40Updated 4 months ago
- 🔗Genome assembly scaffolder using minimizer graphs☆83Updated 6 months ago
- Classifier for metagenomic sequences using FM-index with run-block compressed BWT.☆56Updated 2 weeks ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- PacBio hybrid error correction through iterative short read consensus☆60Updated 5 years ago
- ☆47Updated 2 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆69Updated 3 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated 11 months ago
- ☆113Updated last month
- H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)☆70Updated 4 years ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆81Updated 4 months ago
- Variant calling tool for long-read sequencing data☆106Updated 2 weeks ago