nanoporetech / pychopper
A tool to identify, orient, trim and rescue full length cDNA reads
☆81Updated 2 years ago
Alternatives and similar repositories for pychopper:
Users that are interested in pychopper are comparing it to the libraries listed below
- ☆88Updated 2 months ago
- Research release basecalling models and configurations☆107Updated 8 months ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆101Updated 3 months ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆138Updated last month
- A tool for somatic structural variant calling using long reads☆117Updated this week
- pbsv - PacBio structural variant (SV) calling and analysis tools☆137Updated 2 weeks ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆159Updated last year
- Jasmine: SV Merging Across Samples☆207Updated 2 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆112Updated 2 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆88Updated 3 years ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆143Updated last year
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆183Updated 9 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆96Updated last year
- Dfam Transposable Element Tools Docker container.☆88Updated 3 months ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- Fast and accurate coordinate conversion between assemblies☆112Updated 5 months ago
- Constructing a pangenome gene graph☆183Updated 7 months ago
- Same species annotation lift over pipeline.☆96Updated last year
- Find, circularise and annotate mitogenome from PacBio assemblies☆176Updated last week
- Pangenome-based genome inference☆125Updated this week
- ☆178Updated last month
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 2 weeks ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆95Updated this week
- Nanopore data assembler☆143Updated 2 years ago
- a tool for inferring species tree from sequencing reads☆146Updated 3 weeks ago
- Somatic structural variant caller for long-read data☆60Updated last week
- Dotplot large Genomes in an Interactive, Efficient and Simple way☆103Updated 2 months ago
- Collection of tools for the analysis of CpG data☆79Updated last month
- A list of software for pangenomics☆104Updated last week