Long-read splice alignment with high accuracy
☆64Sep 26, 2024Updated last year
Alternatives and similar repositories for ultra
Users that are interested in ultra are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Feb 15, 2021Updated 5 years ago
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆12May 12, 2025Updated last year
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆68Aug 30, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Long read aligner☆115May 26, 2023Updated 3 years ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆72Jan 31, 2024Updated 2 years ago
- A Python library to visualize and analyze long-read transcriptomes☆69Jan 19, 2026Updated 6 months ago
- Linear-time de novo Long Read Assembler☆43Mar 19, 2026Updated 4 months ago
- long read RNA-seq quantification☆120Updated this week
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Sep 5, 2022Updated 3 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆278Aug 11, 2026Updated last week
- recompute GFA link overlaps☆26Sep 14, 2022Updated 3 years ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆186Apr 12, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆49Apr 20, 2026Updated 3 months ago
- ☆37Aug 6, 2026Updated last week
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 6 years ago
- ☆31Nov 28, 2024Updated last year
- Transcript assembly and quantification for RNA-Seq☆527Aug 9, 2026Updated last week
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆96Aug 2, 2026Updated 2 weeks ago
- TSEBRA: Transcript Selector for BRAKER☆51Apr 7, 2026Updated 4 months ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- JTK -- a regional diploid genome assembler☆26Apr 22, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆12Mar 21, 2026Updated 4 months ago
- Show pangenome graphs in an easy way☆60Aug 7, 2025Updated last year
- Ploidy agnostic phasing pipeline and algorithm☆50Jan 3, 2024Updated 2 years ago
- Fast and accurate coordinate conversion between assemblies☆119Jun 1, 2026Updated 2 months ago
- Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a sing…☆28May 10, 2020Updated 6 years ago
- Bidirectional WFA (Paper)☆50May 20, 2024Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 5 years ago
- Align subreads to ccs reads☆14Jun 11, 2025Updated last year
- Error correction of long reads☆16Jan 30, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- PopSTR - A Population based microsatellite genotyper☆33Oct 23, 2023Updated 2 years ago
- Codes for the Iso-Seq variant-calling paper☆11Apr 28, 2023Updated 3 years ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆54Updated this week
- Hybrid error correction of long reads using colored de Bruijn graphs☆108Jan 17, 2026Updated 7 months ago
- Code to perform homolog detectability analyses as described in Weisman et al. 2020 (https://www.biorxiv.org/content/10.1101/2020.02.27.96…☆18Nov 18, 2024Updated last year
- A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…☆67Jul 23, 2020Updated 6 years ago