BrooksLabUCSC / flair
Full-Length Alternative Isoform analysis of RNA
☆220Updated this week
Alternatives and similar repositories for flair:
Users that are interested in flair are comparing it to the libraries listed below
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆208Updated this week
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆207Updated 2 weeks ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆266Updated last month
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆136Updated 3 years ago
- This Snakemake pipeline implements the GATK best-practices workflow☆248Updated last year
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆143Updated last year
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆212Updated 8 months ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- A bioinformatics tool for working with modified bases☆174Updated last week
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆247Updated 4 months ago
- Genome browser and variant annotation☆296Updated 3 weeks ago
- ☆112Updated last week
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆156Updated last year
- ☆88Updated 2 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆221Updated 4 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆262Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆299Updated 3 weeks ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆113Updated 8 months ago
- Nanopore demultiplexing, QC and alignment pipeline☆194Updated last month
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆199Updated this week
- Read trimming tool for Illumina NGS data.☆131Updated 10 years ago
- Discovering known and novel miRNAs from small RNA sequencing data☆144Updated 6 months ago
- Fast and accurately polish the genome generated by long reads.☆218Updated 2 months ago
- ☆199Updated last month
- Genome Assembly and Annotation Service code☆209Updated last year
- Pipeline to fetch metadata and raw FastQ files from public databases☆168Updated 2 weeks ago
- Download FASTQ files from SRA or ENA repositories.☆307Updated 4 months ago
- Fast and accurate de novo assembler for long reads☆380Updated 10 months ago
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆160Updated this week
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆265Updated last week