Full-Length Alternative Isoform analysis of RNA
☆250Mar 30, 2026Updated last week
Alternatives and similar repositories for flair
Users that are interested in flair are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Technology agnostic long read analysis pipeline for transcriptomes☆157Jan 25, 2024Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆66Oct 11, 2024Updated last year
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆73Jan 31, 2024Updated 2 years ago
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆209Apr 1, 2026Updated last week
- Version II of Mandalorion☆32Feb 1, 2019Updated 7 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆262Updated this week
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆235Mar 27, 2026Updated 2 weeks ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆34Nov 8, 2023Updated 2 years ago
- ☆39Apr 25, 2023Updated 2 years ago
- isoCirc☆10Nov 27, 2023Updated 2 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆58Oct 14, 2024Updated last year
- A Python library to visualize and analyze long-read transcriptomes☆67Jan 19, 2026Updated 2 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Jun 14, 2020Updated 5 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆279Sep 26, 2023Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Full-length transcriptome splicing and mutation analysis☆90Mar 23, 2026Updated 2 weeks ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆85Jul 4, 2022Updated 3 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆79Mar 21, 2023Updated 3 years ago
- SquiggleKit: A toolkit for manipulating nanopore signal data☆128Feb 16, 2024Updated 2 years ago
- RNA modifications detection from Nanopore dRNA-Seq data☆88Mar 30, 2026Updated last week
- Error correction of ONT transcript reads☆58Sep 6, 2023Updated 2 years ago
- Detection of m6A from direct RNA-Seq data☆131May 19, 2025Updated 10 months ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆232Jun 1, 2024Updated last year
- Long-read Isoform Quantification and Analysis☆38Mar 25, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- SUPPA: Fast quantification of splicing and differential splicing☆297Nov 6, 2025Updated 5 months ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆118Mar 2, 2026Updated last month
- ☆14Apr 26, 2023Updated 2 years ago
- cDNA read preprocessing☆87Jul 25, 2024Updated last year
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Oct 12, 2022Updated 3 years ago
- ☆24Dec 24, 2022Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 4 months ago
- Nanopore demultiplexing, QC and alignment pipeline☆221Nov 20, 2025Updated 4 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆268Mar 15, 2026Updated 3 weeks ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Signal-level algorithms for MinION data☆595Aug 5, 2023Updated 2 years ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆234Jul 9, 2025Updated 9 months ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆178Apr 12, 2023Updated 2 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,153Feb 13, 2026Updated last month
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- Identification of differential RNA modifications from nanopore direct RNA sequencing☆163Nov 7, 2024Updated last year
- ☆64Mar 19, 2026Updated 3 weeks ago