clemgoub / TE-Aid
Annotation helper tool for the manual curation of transposable element consensus sequences
☆47Updated 2 weeks ago
Alternatives and similar repositories for TE-Aid:
Users that are interested in TE-Aid are comparing it to the libraries listed below
- MCHelper: An automatic tool to curate transposable element libraries☆33Updated 3 months ago
- A organelle de novo genome assembly toolkit☆55Updated 3 weeks ago
- ☆76Updated 3 weeks ago
- A program for assessing the T2T genome continuity☆69Updated 2 weeks ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆47Updated last year
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- PacBio BAM toolkit☆40Updated 3 weeks ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆54Updated last year
- A shiny application to visualize MCscan result☆35Updated 2 years ago
- High-precision TE Annotator☆103Updated 2 weeks ago
- ☆43Updated 8 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated 2 months ago
- Neural network classification of TE☆87Updated 2 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆76Updated 2 months ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 4 months ago
- De novo annotation of young retrotransposons☆48Updated 2 years ago
- perSVade: personalized Structural Variation detection☆38Updated 3 weeks ago
- A tool for evaluate long-read de novo assembly results☆43Updated 6 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- Mapping pipeline for data generated using Arima-HiC☆76Updated 9 months ago
- A Nextflow pipeline for evaluating assembly quality☆29Updated last week
- ☆71Updated last week
- Genome Annotation Pipeline☆35Updated 7 months ago
- Portable solution to generate genome alignment chains using lastz☆55Updated 5 months ago
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆35Updated last year
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆44Updated last year
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆71Updated 3 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆30Updated 5 months ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆59Updated 2 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆65Updated 3 years ago