clemgoub / TE-AidLinks
Annotation helper tool for the manual curation of transposable element consensus sequences
☆49Updated 4 months ago
Alternatives and similar repositories for TE-Aid
Users that are interested in TE-Aid are comparing it to the libraries listed below
Sorting:
- MCHelper: An automatic tool to curate transposable element libraries☆36Updated 2 weeks ago
- A organelle de novo genome assembly toolkit☆60Updated 4 months ago
- A Nextflow pipeline for evaluating assembly quality☆34Updated 2 weeks ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆48Updated last year
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆51Updated last week
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆57Updated 2 years ago
- A program for assessing the T2T genome continuity☆81Updated 2 weeks ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 8 months ago
- Portable solution to generate genome alignment chains using lastz☆57Updated last month
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆79Updated 2 months ago
- Show pangenome graphs in an easy way☆56Updated 2 years ago
- RepeatIdentifier☆66Updated 3 months ago
- Mapping pipeline for data generated using Arima-HiC☆78Updated last year
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆39Updated 3 months ago
- Application of pan-genome for population☆107Updated 9 months ago
- perSVade: personalized Structural Variation detection☆40Updated this week
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated 8 months ago
- ☆44Updated 8 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Neural network classification of TE☆90Updated last month
- ☆74Updated this week
- ☆41Updated 5 months ago
- PacBio BAM toolkit☆43Updated 4 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆67Updated 4 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- Plant genome assembly and annotation pipeline using snakemake☆44Updated 2 months ago