Alternatives and similar repositories for repeatcraftp

Users that are interested in repeatcraftp are comparing it to the libraries listed below

• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆59Updated 2 years ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆49Updated 2 months ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆38Updated 3 years ago
• mapleforest / HaploMerger2
  ☆45Updated 9 years ago
• annaprotasio / TE_ManAnnot
  Accompanying repository for our publications on manual curation methods for Transposable Elements.
  ☆21Updated last year
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆36Updated 3 years ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆76Updated 4 years ago
• rhysf / Synima
  Synteny Imager
  ☆65Updated last month
• ChongLab / Inspector
  A tool for evaluate long-read de novo assembly results
  ☆48Updated last year
• LiLabAtVT / DeepTE
  Neural network classification of TE
  ☆97Updated 3 months ago
• PombertLab / SYNY
  The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
  ☆49Updated 3 weeks ago
• c-zhou / oatk
  A organelle de novo genome assembly toolkit
  ☆73Updated 10 months ago
• shingocat / lrscaf
  TGS scaffolding
  ☆47Updated 4 years ago
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆55Updated 6 months ago
• sjteresi / TE_Density
  Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…
  ☆36Updated last year
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆69Updated 4 years ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆50Updated 2 months ago
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆57Updated 5 months ago
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆92Updated last month
• celphin / RepeatOBserverV1
  An R package to visualize chromosome scale repeat patterns and predict centromere locations.
  ☆43Updated 2 months ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆109Updated 11 months ago
• vlothec / TRASH
  RepeatIdentifier
  ☆71Updated 10 months ago
• mahulchak / svmu
  A program to call variants from genome alignment
  ☆81Updated 8 months ago
• xzhub / LTR_Finder
  LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.
  ☆51Updated 2 years ago
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆15Updated 2 months ago
• hillerlab / GenomeAlignmentTools
  Tools for improving the sensitivity and specificity of genome alignments
  ☆58Updated 2 years ago
• johnssproul / RepeatProfiler
  ☆26Updated 11 months ago
• kjenike / panagram
  ☆68Updated last week
• shilpagarg / DipAsm
  ☆78Updated 5 years ago
• piosierra / pantera
  Identification of transposable element families from pangenome polymorphisms
  ☆55Updated 7 months ago