niccw / repeatcraftpLinks
meta-pipeline for repetitive element de-fragmentation and annotation
☆25Updated 4 years ago
Alternatives and similar repositories for repeatcraftp
Users that are interested in repeatcraftp are comparing it to the libraries listed below
Sorting:
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆57Updated 2 years ago
- ☆44Updated 8 years ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 8 months ago
- A tool for evaluate long-read de novo assembly results☆48Updated 10 months ago
- A program to call variants from genome alignment☆81Updated 2 months ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆20Updated last year
- ☆32Updated 4 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆32Updated 3 months ago
- Call select base modifications in PacBio HiFi reads☆8Updated 5 months ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 5 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- Synteny Imager☆63Updated 10 months ago
- ☆76Updated 5 years ago
- Neural network classification of TE☆90Updated last month
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- Pipeline to convert a haploid assembly into diploid☆100Updated 5 months ago
- Python wrappers for programs that search for transposable elements☆19Updated 9 years ago
- finshingTool☆54Updated 8 years ago
- TGS scaffolding☆46Updated 3 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆67Updated 4 years ago
- ☆63Updated last week
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆71Updated 3 months ago
- Tools for improving the sensitivity and specificity of genome alignments☆57Updated last year
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆49Updated last year
- A program for assessing the T2T genome continuity☆81Updated 2 weeks ago
- SRF: Satellite Repeat Finder☆96Updated last year
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- Show pangenome graphs in an easy way☆56Updated 2 years ago