niccw / repeatcraftpLinks
meta-pipeline for repetitive element de-fragmentation and annotation
☆26Updated 5 years ago
Alternatives and similar repositories for repeatcraftp
Users that are interested in repeatcraftp are comparing it to the libraries listed below
Sorting:
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- ☆44Updated 8 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆21Updated last year
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆53Updated 3 months ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- ☆79Updated 5 years ago
- Show pangenome graphs in an easy way☆56Updated 2 months ago
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- A (very) simple script to QC Hi-C data.☆26Updated 10 months ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆34Updated last year
- ☆26Updated 8 months ago
- TSEBRA: Transcript Selector for BRAKER☆48Updated 11 months ago
- A program to call variants from genome alignment☆81Updated 6 months ago
- Neural network classification of TE☆96Updated 2 weeks ago
- Call select base modifications in PacBio HiFi reads☆14Updated 8 months ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆33Updated 6 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆83Updated 4 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- RepeatIdentifier☆70Updated 7 months ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆51Updated 7 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆49Updated 4 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆50Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆48Updated 5 months ago
- Portable solution to generate genome alignment chains using lastz☆59Updated last month
- Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning☆28Updated last year
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 9 months ago