UniRep model, usage, and examples.
☆367Mar 1, 2026Updated 7 months ago
Alternatives and similar repositories for UniRep
Users that are interested in UniRep are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis and figure code from Alley et al. 2019.☆60Mar 25, 2023Updated 3 years ago
- Reimplementation of the UniRep protein featurization model.☆108Sep 4, 2026Updated last month
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆745Dec 11, 2022Updated 3 years ago
- A generative latent variable model for biological sequence families.☆258Mar 15, 2022Updated 4 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆62Apr 8, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019☆262Jun 16, 2021Updated 5 years ago
- Evolutionary couplings from protein and RNA sequence alignments☆315Apr 20, 2026Updated 6 months ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,324May 22, 2025Updated last year
- A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …☆28Aug 7, 2020Updated 6 years ago
- Listing of papers about machine learning for proteins.☆1,719May 31, 2024Updated 2 years ago
- Mutation effects predicted from sequence co-variation☆75Sep 3, 2017Updated 9 years ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆95Jul 13, 2023Updated 3 years ago
- Standardized data set for machine learning of protein structure☆919Nov 18, 2020Updated 5 years ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆121Aug 7, 2021Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,171Feb 7, 2024Updated 2 years ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆138Nov 17, 2021Updated 4 years ago
- ☆187Feb 8, 2022Updated 4 years ago
- ☆128Feb 16, 2021Updated 5 years ago
- A package to predict protein inter-residue geometries from sequence data☆221Sep 27, 2021Updated 5 years ago
- Protein function prediction using a variational autoencoder☆95Mar 7, 2018Updated 8 years ago
- Get protein embeddings from protein sequences☆511Apr 28, 2023Updated 3 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆122Sep 15, 2020Updated 6 years ago
- trRosetta for protein design☆184May 15, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆85Oct 27, 2021Updated 5 years ago
- ☆261Jul 31, 2024Updated 2 years ago
- Protein sequence classification with self-supervised pretraining☆82Nov 29, 2021Updated 4 years ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆73Feb 21, 2026Updated 8 months ago
- Protein design and variant prediction using autoregressive generative models☆125Jan 23, 2024Updated 2 years ago
- Generative Models for Graph-Based Protein Design☆292Dec 24, 2020Updated 5 years ago
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆785Jun 19, 2024Updated 2 years ago
- Recurrent Geometric Networks for end-to-end differentiable learning of protein structure☆324Aug 1, 2019Updated 7 years ago
- ☆584Apr 7, 2026Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."☆305May 1, 2025Updated last year
- Deep functional residue identification☆354Mar 24, 2023Updated 3 years ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆143Apr 23, 2026Updated 6 months ago
- An evolutionary context-integrated deep learning framework for protein engineering☆72Jun 1, 2022Updated 4 years ago
- Remote protein homology detection suite.☆630Oct 7, 2026Updated 3 weeks ago
- De novo protein structure prediction using iteratively predicted structural constraints☆60Jan 30, 2022Updated 4 years ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆170Aug 24, 2023Updated 3 years ago