churchlab / UniRep
UniRep model, usage, and examples.
☆347Updated 2 years ago
Alternatives and similar repositories for UniRep:
Users that are interested in UniRep are comparing it to the libraries listed below
- Evolutionary couplings from protein and RNA sequence alignments☆258Updated 2 weeks ago
- ☆240Updated 7 months ago
- A package to predict protein inter-residue geometries from sequence data☆213Updated 3 years ago
- A generative latent variable model for biological sequence families.☆214Updated 3 years ago
- Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019☆259Updated 3 years ago
- Get protein embeddings from protein sequences☆481Updated last year
- Deep functional residue identification☆315Updated last year
- Protein hallucination and inpainting with RoseTTAFold☆253Updated last year
- Reimplementation of the UniRep protein featurization model.☆104Updated 6 months ago
- ☆127Updated 4 years ago
- Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies☆350Updated last year
- User friendly and accurate binder design pipeline☆463Updated last week
- trRosetta for protein design☆177Updated 3 years ago
- Efficient evolution from protein language models☆192Updated last year
- ☆194Updated 3 years ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆680Updated 2 years ago
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆634Updated 9 months ago
- Remote protein homology detection suite.☆563Updated 4 months ago
- Antibody Numbering and Antigen Receptor ClassIfication☆203Updated 9 months ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆122Updated 3 years ago
- ☆291Updated 7 months ago
- A collection of *fold* tools☆294Updated 6 months ago
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆252Updated last year
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆107Updated last year
- Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting…☆160Updated last year
- Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.☆159Updated 2 years ago
- ☆256Updated this week
- Compressing protein structures effectively with torsion angles☆169Updated 7 months ago
- Bilingual Language Model for Protein Sequence and Structure☆225Updated 2 months ago
- Official repository for the ProteinGym benchmarks☆283Updated last week