churchlab / low-N-protein-engineeringLinks
Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
☆59Updated 4 years ago
Alternatives and similar repositories for low-N-protein-engineering
Users that are interested in low-N-protein-engineering are comparing it to the libraries listed below
Sorting:
- Mutation effects predicted from sequence co-variation☆66Updated 7 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆88Updated last year
- ☆49Updated 2 months ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 3 years ago
- Evolutionary velocity with protein language models☆93Updated last year
- ☆37Updated 5 months ago
- A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …☆27Updated 4 years ago
- ☆41Updated 5 months ago
- A domain parser for Alphafold models☆38Updated last year
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆54Updated 2 months ago
- Neural networks for deep mutational scanning data☆69Updated 3 weeks ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆41Updated last month
- Predict the structure of immune receptor proteins☆49Updated 7 months ago
- ☆24Updated 3 years ago
- Deciphering protein evolution and fitness landscapes with latent space models☆32Updated 3 years ago
- Direct coupling analysis software for protein and RNA sequences☆50Updated last month
- Tool for modelling the CDRs of antibodies☆48Updated 2 years ago
- ☆68Updated 9 months ago
- ☆30Updated last year
- Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…☆19Updated last year
- Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…☆47Updated 2 months ago
- ☆26Updated last year
- RNA Multiple Sequence Alignment☆42Updated last year
- Public repository describing training and testing of AntiBERTa.☆59Updated 2 years ago
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆30Updated 2 years ago
- Fast and accurate protein structure prediction☆53Updated 5 months ago
- ☆37Updated 3 years ago
- The code used to generate the results from Parkinson / Hard et al. 2022☆17Updated last month
- Results and data from the pilot round of the Protein Engineering Tournament☆29Updated 3 months ago
- Machine learning-driven antibody design☆58Updated last year