Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
☆62Apr 8, 2021Updated 5 years ago
Alternatives and similar repositories for low-N-protein-engineering
Users that are interested in low-N-protein-engineering are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …☆27Aug 7, 2020Updated 5 years ago
- UniRep model, usage, and examples.☆365Mar 1, 2026Updated 3 months ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆136Nov 17, 2021Updated 4 years ago
- ☆189Feb 8, 2022Updated 4 years ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Oct 27, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Reimplementation of the UniRep protein featurization model.☆107Sep 3, 2024Updated last year
- Code for our paper "Protein sequence design with a learned potential"☆82Sep 8, 2023Updated 2 years ago
- Fitness landscape exploration sandbox for biological sequence design.☆173Feb 16, 2023Updated 3 years ago
- trRosetta for protein design☆183May 15, 2021Updated 5 years ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆95Jul 13, 2023Updated 2 years ago
- Bioinformatics code for paper associated with deep diversification of AAV☆41Nov 27, 2024Updated last year
- Contact map alignment☆44Feb 3, 2021Updated 5 years ago
- ☆79Oct 27, 2021Updated 4 years ago
- We introduce a differentiable approach to phylogenetic tree construction, optimizing tree and ancestral sequences in its original represe…☆21Apr 2, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆30Apr 2, 2026Updated 2 months ago
- A generative latent variable model for biological sequence families.☆253Mar 15, 2022Updated 4 years ago
- Implementation of Evolutionary and Metropolis Hastings Monte Carlo for text based (e.g. nucleotide/peptide) sequences☆13Mar 7, 2024Updated 2 years ago
- ☆62Nov 21, 2022Updated 3 years ago
- Determining tandem repeat lengths using raw nanopore signals.☆15Sep 11, 2023Updated 2 years ago
- Parametric Building of de novo Functional Topologies☆45Mar 11, 2022Updated 4 years ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆188Apr 21, 2024Updated 2 years ago
- Tool for modelling the CDRs of antibodies☆52Jan 19, 2023Updated 3 years ago
- Scripts and data deposition for de novo heterodimers manuscript☆11Dec 15, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Official repository for "Plug & Play Directed Evolution for Proteins with Gradient-Based Discrete MCMC"☆12Jul 18, 2023Updated 2 years ago
- Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax☆114Sep 8, 2021Updated 4 years ago
- open source repository☆148Nov 30, 2023Updated 2 years ago
- ☆76Sep 2, 2020Updated 5 years ago
- Protein hallucination and inpainting with RoseTTAFold☆283Mar 30, 2023Updated 3 years ago
- Software to process, statistically analyse and visualise deep mutational scanning data☆14Apr 28, 2026Updated last month
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆90Jun 23, 2024Updated last year
- Explaining the genetic causality for complex diseases by deep association kernel learning☆15May 7, 2021Updated 5 years ago
- HiCOPS: Computational framework for peptide identification from MS data through accelerated database search☆10Mar 24, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Protein design and variant prediction using autoregressive generative models☆121Jan 23, 2024Updated 2 years ago
- ☆15Jun 26, 2018Updated 7 years ago
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- Code used in the manuscript for De Novo Design of Bioactive Protein Switches☆17May 16, 2019Updated 7 years ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆36Jun 1, 2022Updated 4 years ago
- Evolutionary couplings from protein and RNA sequence alignments☆307Apr 20, 2026Updated last month
- Biobb_amber is a BioBB category for AMBER MD package.☆15Jun 2, 2026Updated 2 weeks ago