Alternatives and similar repositories for low-N-protein-engineering

Users that are interested in low-N-protein-engineering are comparing it to the libraries listed below

• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆90Updated last year
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆70Updated 8 years ago
• Doudna-lab / GARNET_DL
  ☆36Updated 9 months ago
• gitter-lab / nn4dms
  Neural networks for deep mutational scanning data
  ☆70Updated 5 months ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆94Updated 2 years ago
• greener-group / progres
  Fast protein structure searching or your money back
  ☆114Updated 2 weeks ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆53Updated 2 months ago
• KIT-MBS / pydca
  Direct coupling analysis software for protein and RNA sequences
  ☆53Updated 3 months ago
• DeepRank / DeepRank-GNN-esm
  Graph Network for protein-protein interface including language model features
  ☆32Updated last year
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆60Updated 7 months ago
• SNU-CSSB / RF2-Lite
  ☆30Updated last year
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆34Updated 3 years ago
• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆57Updated 11 months ago
• ranganathanlab / bmDCA
  Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).
  ☆35Updated 5 years ago
• AbSciBio / igdesign
  ☆47Updated 9 months ago
• manifoldbio / mber-open
  mBER - Manifold Binder Engineering and Refinement. mBER enables antibody binder design by leveraging structure templates and sequence con…
  ☆71Updated this week
• BrooksResearchGroup-UM / PEVAE_Paper
  Deciphering protein evolution and fitness landscapes with latent space models
  ☆35Updated 4 years ago
• tymor22 / tm-vec
  ☆72Updated last year
• lehner-lab / MoCHI
  Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…
  ☆54Updated 6 months ago
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆51Updated last year
• ivanjayapurna / low-n-protein-engineering
  A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …
  ☆27Updated 5 years ago
• marcellszi / rna3db
  A dataset for training and benchmarking deep learning models for RNA structure prediction
  ☆58Updated 3 weeks ago
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆56Updated 9 months ago
• jlparkI / AntPack
  Tools for annotation, processing and ML for antibody sequences
  ☆33Updated this week
• lehner-lab / doubledeepms
  Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…
  ☆21Updated 2 years ago
• Shunsuke-1994 / rfamgen
  Code repository of "Deep generative design of RNA family sequences"
  ☆38Updated last year
• Wang-lab-UCSD / RESP
  The code used to generate the results from Parkinson / Hard et al. 2022
  ☆17Updated 4 months ago
• csi-greifflab / manuscript_insilico_antibody_generation
  ☆23Updated 4 years ago
• GreiffLab / manuscript_ab_epitope_interaction
  ☆25Updated last year
• xinyu-dev / annotate_v
  Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python
  ☆30Updated 2 years ago