A package to predict protein inter-residue geometries from sequence data
☆222Sep 27, 2021Updated 4 years ago
Alternatives and similar repositories for trRosetta
Users that are interested in trRosetta are comparing it to the libraries listed below
Sorting:
- Repository for publicly available deep learning models developed in Rosetta community☆123Sep 18, 2021Updated 4 years ago
- trRosetta for protein design☆184May 15, 2021Updated 4 years ago
- Deep residual neural network for protein contact/distance prediction developed by Xu group☆79Sep 13, 2020Updated 5 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆60Jan 30, 2022Updated 4 years ago
- ☆27Feb 8, 2026Updated 3 weeks ago
- Deep ResNet-based protein contact prediction☆20Mar 30, 2020Updated 5 years ago
- Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.☆89Jun 18, 2021Updated 4 years ago
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆99Jan 26, 2022Updated 4 years ago
- ResPRE is an algorithm for protein residue-residue contact-map prediction☆21May 20, 2019Updated 6 years ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆732Dec 11, 2022Updated 3 years ago
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆732Jun 19, 2024Updated last year
- Guided Conditional Wasserstein GAN for De Novo Protein Design☆35Feb 23, 2021Updated 5 years ago
- Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design☆668Updated this week
- Energy-based models for atomic-resolution protein conformations☆103Mar 22, 2022Updated 3 years ago
- Code for our paper "Protein sequence design with a learned potential"☆34Aug 5, 2021Updated 4 years ago
- Protein hallucination and inpainting with RoseTTAFold☆279Mar 30, 2023Updated 2 years ago
- ☆117Dec 7, 2022Updated 3 years ago
- Remote protein homology detection suite.☆615Aug 12, 2025Updated 6 months ago
- code for the SE3 Transformers paper: https://arxiv.org/abs/2006.10503☆570Jul 10, 2023Updated 2 years ago
- ☆91Sep 7, 2022Updated 3 years ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,291May 22, 2025Updated 9 months ago
- UniRep model, usage, and examples.☆360Jun 21, 2022Updated 3 years ago
- PyTorch library of layers acting on protein representations☆119Jun 30, 2024Updated last year
- ProSPr: Protein Structure Prediction☆418Oct 6, 2022Updated 3 years ago
- An all-atom protein structure dataset for machine learning.☆359Mar 16, 2024Updated last year
- Physical energy function for protein sequence design☆37May 6, 2023Updated 2 years ago
- This package contains deep learning models and related scripts for RoseTTAFold☆2,231Feb 15, 2024Updated 2 years ago
- Deep learning prediction of protein residue-residue distances☆23Jun 28, 2022Updated 3 years ago
- Parametric Building of de novo Functional Topologies☆44Mar 11, 2022Updated 3 years ago
- PDBFixer fixes problems in PDB files☆626Oct 30, 2025Updated 4 months ago
- Code for the ProteinMPNN paper☆1,636Aug 14, 2024Updated last year
- Protein common interface databases☆10Apr 13, 2019Updated 6 years ago
- Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure☆52Mar 7, 2025Updated 11 months ago
- Standardized data set for machine learning of protein structure☆908Nov 18, 2020Updated 5 years ago
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆369Feb 26, 2026Updated last week
- ☆209Apr 21, 2025Updated 10 months ago
- OmegaFold Release Code☆612Dec 12, 2022Updated 3 years ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆117Updated this week
- ☆28Dec 6, 2022Updated 3 years ago