chloechsu / combining-evolutionary-and-assay-labelled-data
☆56Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for combining-evolutionary-and-assay-labelled-data
- Fitness landscapes for antibodies☆51Updated 7 months ago
- Public repository describing training and testing of AntiBERTa.☆54Updated last year
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆43Updated last week
- Convenience Python APIs for antibody numbering using ANARCI☆84Updated last month
- Antibody-Antigen Docking and Affinity Benchmark☆66Updated 4 years ago
- A compilation of deep learning methods for protein design☆94Updated 2 years ago
- ☆84Updated 2 years ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆122Updated 3 years ago
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆41Updated 5 months ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆82Updated 2 weeks ago
- Enzyme Activity Prediction of Sequence Variants onNovel Substrates using Improved Substrate Encodings and Convolutional Pooling☆16Updated last year
- ☆67Updated 4 years ago
- A bunch of shell utilities for dealing the silent files☆53Updated 4 months ago
- Protein folding in Pymol☆95Updated 3 months ago
- Unconstrained lattice antibody-antigen bindings generator☆101Updated 4 months ago
- ☆70Updated 6 months ago
- Nucleic Acids Research 2024:RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆49Updated 3 months ago
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆47Updated 7 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆125Updated 2 months ago
- Predict the structure of immune receptor proteins☆120Updated 4 months ago
- ☆82Updated 4 months ago
- ☆94Updated last month
- ☆78Updated last week
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆94Updated last month
- ☆96Updated 3 weeks ago
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆33Updated last year
- This repository implements Gibbs sampling with Graph-based Smoothing☆36Updated 5 months ago
- ☆19Updated 5 months ago
- ☆104Updated 2 years ago
- Deciphering protein evolution and fitness landscapes with latent space models☆30Updated 3 years ago