Alternatives and similar repositories for combining-evolutionary-and-assay-labelled-data

Users that are interested in combining-evolutionary-and-assay-labelled-data are comparing it to the libraries listed below

• wenjiegroup / ProMEP
  Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning
  ☆69Updated 5 months ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆78Updated 4 months ago
• dahjan / DMS_opt
  ☆74Updated 5 years ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆77Updated 2 months ago
• hefeda / PGP
  ☆41Updated 4 months ago
• A-Alpha-Bio / alphabind
  AlphaBind code + model accompanying pre-print
  ☆87Updated 5 months ago
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆88Updated last year
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆61Updated 2 years ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆127Updated last month
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆69Updated 6 months ago
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆116Updated 2 months ago
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆109Updated 2 months ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆68Updated 4 months ago
• marcellszi / rna3db
  A dataset for training and benchmarking deep learning models for RNA structure prediction
  ☆61Updated last month
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆132Updated 3 weeks ago
• hugohrban / ProGen2-finetuning
  Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.
  ☆85Updated 11 months ago
• Kuhlman-Lab / evopro
  ☆93Updated 3 months ago
• oxpig / Graphinity
  Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity
  ☆56Updated 6 months ago
• jvkersch / tmtools
  Python bindings for the TM-align algorithm and code for protein structure comparison developed by Zhang et al.
  ☆64Updated 2 months ago
• varun-shanker / structural-evolution
  ☆120Updated last year
• luo-group / ConFit
  Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape
  ☆35Updated last month
• ievapudz / TemStaPro
  TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.
  ☆70Updated last year
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆130Updated 4 years ago
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆131Updated last month
• maranasgroup / CatPred
  Machine Learning models for in vitro enzyme kinetic parameter prediction
  ☆68Updated 9 months ago
• zhanghaicang / carbonmatrix_public
  ☆119Updated last week
• AbSciBio / igdesign
  ☆47Updated last year
• piercelab / antibody_benchmark
  Antibody-Antigen Docking and Affinity Benchmark
  ☆75Updated 5 years ago
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆151Updated last month
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆112Updated 7 months ago