☆77Oct 27, 2021Updated 4 years ago
Alternatives and similar repositories for combining-evolutionary-and-assay-labelled-data
Users that are interested in combining-evolutionary-and-assay-labelled-data are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆166Aug 24, 2023Updated 2 years ago
- An evolutionary context-integrated deep learning framework for protein engineering☆70Jun 1, 2022Updated 3 years ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆135Nov 17, 2021Updated 4 years ago
- Fitness landscape exploration sandbox for biological sequence design.☆171Feb 16, 2023Updated 3 years ago
- ☆259Jul 31, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Repository containing scripts and analysis for ML-Guided Acyl-ACP Reductase Engineering paper☆11Nov 21, 2023Updated 2 years ago
- Implementation of Evolutionary and Metropolis Hastings Monte Carlo for text based (e.g. nucleotide/peptide) sequences☆13Mar 7, 2024Updated 2 years ago
- Efficient evolution from protein language models☆222Aug 26, 2023Updated 2 years ago
- A generative latent variable model for biological sequence families.☆250Mar 15, 2022Updated 4 years ago
- Evolutionary couplings from protein and RNA sequence alignments☆301Oct 23, 2025Updated 5 months ago
- PyTorch implementation for our paper "Proximal Exploration for Model-guided Protein Sequence Design"☆38Aug 7, 2023Updated 2 years ago
- Reimplementation of the UniRep protein featurization model.☆108Sep 3, 2024Updated last year
- ☆214Sep 24, 2024Updated last year
- Official repository for the ProteinGym benchmarks☆413Mar 25, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Jun 1, 2022Updated 3 years ago
- CLEAN: a contrastive learning model for high-quality functional prediction of proteins☆306Apr 6, 2025Updated last year
- Protein scoring and sampling of 'Combinatorial Variant Effects from Structure' (CoVES)☆11Jan 5, 2024Updated 2 years ago
- This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-sho…☆351Jun 11, 2025Updated 10 months ago
- UniRep model, usage, and examples.☆362Mar 1, 2026Updated last month
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆18Feb 8, 2024Updated 2 years ago
- Mutation effects predicted from sequence co-variation☆75Sep 3, 2017Updated 8 years ago
- ☆16Mar 28, 2025Updated last year
- ☆42Mar 16, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023…☆23Aug 8, 2024Updated last year
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆36Dec 8, 2025Updated 4 months ago
- Making Protein Language Modeling Accessible to All Biologists☆159Updated this week
- A computational method to optimize degenerate codons for synthesizing an informed combinatorial mutagenesis protein variant library☆17Feb 18, 2025Updated last year
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆199Mar 16, 2024Updated 2 years ago
- ☆16Dec 10, 2024Updated last year
- Bayesian Optimization with Pretrained Protein Sequence Models☆56Jul 27, 2024Updated last year
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated last month
- ML-optimized library design with improved fitness and diversity for protein engineering☆37Nov 5, 2025Updated 5 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Protein design and variant prediction using autoregressive generative models☆120Jan 23, 2024Updated 2 years ago
- A domain parser for Alphafold models☆47Dec 12, 2023Updated 2 years ago
- Transfer learning for Mutation Effect Prediction☆17Feb 13, 2024Updated 2 years ago
- Neural networks for deep mutational scanning data☆72May 30, 2025Updated 10 months ago
- Code and Pre-Trained Models for "AttnPacker: An end-to-end deep learning method for protein side-chain packing"☆92Dec 29, 2023Updated 2 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆61Apr 8, 2021Updated 5 years ago
- Diffusion-based all-atom protein generative model.☆234Aug 27, 2025Updated 7 months ago