Alternatives and similar repositories for combining-evolutionary-and-assay-labelled-data

Users that are interested in combining-evolutionary-and-assay-labelled-data are comparing it to the libraries listed below

• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆59Updated 2 years ago
• hefeda / PGP
  ☆37Updated last week
• oxpig / Graphinity
  Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity
  ☆31Updated last month
• hugohrban / ProGen2-finetuning
  Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.
  ☆59Updated 4 months ago
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆71Updated 4 months ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆57Updated 6 months ago
• dahjan / DMS_opt
  ☆68Updated 4 years ago
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆72Updated last year
• wenjiegroup / ProMEP
  Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning
  ☆59Updated 11 months ago
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆36Updated 6 months ago
• maranasgroup / CatPred
  Machine Learning models for in vitro enzyme kinetic parameter prediction
  ☆45Updated last month
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆96Updated 3 weeks ago
• luo-group / ConFit
  Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape
  ☆29Updated 9 months ago
• marcellszi / rna3db
  A dataset for training and benchmarking deep learning models for RNA structure prediction
  ☆56Updated 5 months ago
• ievapudz / TemStaPro
  TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.
  ☆56Updated last year
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆55Updated 2 weeks ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆56Updated 4 months ago
• piercelab / antibody_benchmark
  Antibody-Antigen Docking and Affinity Benchmark
  ☆71Updated 4 years ago
• jeffreyruffolo / AntiBERTy
  Antibody-specific masked language model
  ☆55Updated last year
• idmjky / EvolvePro
  PLM based active learning model for protein engineering
  ☆80Updated 9 months ago
• A-Alpha-Bio / alphabind
  AlphaBind code + model accompanying pre-print
  ☆56Updated 5 months ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆113Updated 2 months ago
• oxpig / ABlooper
  Tool for modelling the CDRs of antibodies
  ☆48Updated 2 years ago
• RSchmirler / data-repo_plm-finetune-eval
  Data repository for "Fine-tuning protein language models boosts predictions across diverse tasks"
  ☆40Updated 9 months ago
• Kuhlman-Lab / evopro
  ☆81Updated 2 months ago
• Kortemme-Lab / flex_ddG_tutorial
  ☆114Updated 2 years ago
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆96Updated 2 weeks ago
• bcov77 / silent_tools
  A bunch of shell utilities for dealing the silent files
  ☆61Updated 2 weeks ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆42Updated 6 months ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆49Updated 2 months ago