Alternatives and similar repositories for combining-evolutionary-and-assay-labelled-data:

Users that are interested in combining-evolutionary-and-assay-labelled-data are comparing it to the libraries listed below

• dahjan / DMS_opt
  ☆68Updated 4 years ago
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆95Updated 3 months ago
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆58Updated 2 years ago
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆68Updated 3 months ago
• marcellszi / rna3db
  A dataset for training and benchmarking deep learning models for RNA structure prediction
  ☆50Updated 4 months ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆50Updated 5 months ago
• hugohrban / ProGen2-finetuning
  Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.
  ☆57Updated 3 months ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆39Updated 5 months ago
• hefeda / PGP
  ☆37Updated last year
• maranasgroup / CatPred
  Machine Learning models for in vitro enzyme kinetic parameter prediction
  ☆43Updated 3 weeks ago
• piercelab / antibody_benchmark
  Antibody-Antigen Docking and Affinity Benchmark
  ☆71Updated 4 years ago
• Kuhlman-Lab / evopro
  ☆76Updated last month
• wenjiegroup / ProMEP
  Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning
  ☆59Updated 10 months ago
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆71Updated last year
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆55Updated 3 months ago
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆54Updated 2 months ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆112Updated last month
• oxpig / Graphinity
  Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity
  ☆30Updated 2 weeks ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆49Updated last month
• luo-group / ConFit
  Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape
  ☆27Updated 8 months ago
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆124Updated 3 years ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 2 years ago
• oxpig / ABlooper
  Tool for modelling the CDRs of antibodies
  ☆47Updated 2 years ago
• Kortemme-Lab / flex_ddG_tutorial
  ☆109Updated 2 years ago
• AbSciBio / igdesign
  ☆38Updated 3 months ago
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆115Updated last week
• A-Alpha-Bio / alphabind
  AlphaBind code + model accompanying pre-print
  ☆52Updated 4 months ago
• DunbrackLab / IPSAE
  Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
  ☆49Updated 3 weeks ago
• zhanghaicang / carbonmatrix_public
  ☆111Updated last week
• robpearc / DeepFoldRNA
  ☆35Updated last year