Listing of papers about machine learning for proteins.
☆1,713May 31, 2024Updated 2 years ago
Alternatives and similar repositories for Machine-learning-for-proteins
Users that are interested in Machine-learning-for-proteins are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- List of papers about Proteins Design using Deep Learning☆1,957Aug 2, 2026Updated last week
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆741Dec 11, 2022Updated 3 years ago
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,170Feb 7, 2024Updated 2 years ago
- A collection of *fold* tools☆304Aug 8, 2025Updated last year
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,321May 22, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2☆3,413Dec 16, 2025Updated 7 months ago
- Standardized data set for machine learning of protein structure☆918Nov 18, 2020Updated 5 years ago
- Protein Graph Library☆1,187Updated this week
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆767Jun 19, 2024Updated 2 years ago
- Making Protein Design accessible to all via Google Colab!☆926Apr 6, 2026Updated 4 months ago
- ☆259Jul 31, 2024Updated 2 years ago
- Code for the ProteinMPNN paper☆1,824Aug 14, 2024Updated last year
- Get protein embeddings from protein sequences☆508Apr 28, 2023Updated 3 years ago
- Making Protein folding accessible to all!☆2,874Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Diffusion models of protein structure; trigonometry and attention are all you need!☆565Dec 12, 2023Updated 2 years ago
- Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design☆705Aug 5, 2026Updated last week
- Code for running RFdiffusion☆3,011Jul 15, 2026Updated 3 weeks ago
- Awesome Protein Representation Learning☆688Nov 16, 2024Updated last year
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,279Updated this week
- UniRep model, usage, and examples.☆366Mar 1, 2026Updated 5 months ago
- ATOM3D: tasks on molecules in three dimensions☆319Mar 2, 2023Updated 3 years ago
- OmegaFold Release Code☆625Dec 12, 2022Updated 3 years ago
- An all-atom protein structure dataset for machine learning.☆366Mar 16, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A generative model for programmable protein design☆827Apr 11, 2024Updated 2 years ago
- Generative Models for Graph-Based Protein Design☆291Dec 24, 2020Updated 5 years ago
- Official repository for the ProteinGym benchmarks☆459Mar 25, 2026Updated 4 months ago
- trRosetta for protein design☆183May 15, 2021Updated 5 years ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆333Oct 28, 2024Updated last year
- Generation of protein sequences and evolutionary alignments via discrete diffusion models☆678Jan 15, 2026Updated 6 months ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆189Apr 21, 2024Updated 2 years ago
- ☆2,899Jul 28, 2026Updated 2 weeks ago
- Official release of the ProGen models☆705Jun 2, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Diffusion-based all-atom protein generative model.☆237Aug 27, 2025Updated 11 months ago
- Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure☆326Nov 15, 2025Updated 8 months ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆170Aug 24, 2023Updated 2 years ago
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆280Feb 14, 2024Updated 2 years ago
- Evolutionary couplings from protein and RNA sequence alignments☆313Apr 20, 2026Updated 3 months ago
- ☆189Feb 8, 2022Updated 4 years ago
- Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking☆1,562May 2, 2025Updated last year