Listing of papers about machine learning for proteins.
☆1,697May 31, 2024Updated last year
Alternatives and similar repositories for Machine-learning-for-proteins
Users that are interested in Machine-learning-for-proteins are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- List of papers about Proteins Design using Deep Learning☆1,914Apr 4, 2026Updated last week
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆736Dec 11, 2022Updated 3 years ago
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,025Feb 7, 2024Updated 2 years ago
- A collection of *fold* tools☆304Aug 8, 2025Updated 8 months ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,296May 22, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2☆3,324Dec 16, 2025Updated 3 months ago
- Standardized data set for machine learning of protein structure☆913Nov 18, 2020Updated 5 years ago
- Protein Graph Library☆1,169Mar 20, 2026Updated 3 weeks ago
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆740Jun 19, 2024Updated last year
- Making Protein Design accessible to all via Google Colab!☆901Apr 6, 2026Updated last week
- ☆257Jul 31, 2024Updated last year
- Code for the ProteinMPNN paper☆1,694Aug 14, 2024Updated last year
- Get protein embeddings from protein sequences☆508Apr 28, 2023Updated 2 years ago
- Making Protein folding accessible to all!☆2,709Mar 17, 2026Updated 3 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Diffusion models of protein structure; trigonometry and attention are all you need!☆566Dec 12, 2023Updated 2 years ago
- Code for running RFdiffusion☆2,810Nov 20, 2025Updated 4 months ago
- Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design☆681Feb 27, 2026Updated last month
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,210Mar 10, 2026Updated last month
- ATOM3D: tasks on molecules in three dimensions☆318Mar 2, 2023Updated 3 years ago
- UniRep model, usage, and examples.☆362Mar 1, 2026Updated last month
- OmegaFold Release Code☆617Dec 12, 2022Updated 3 years ago
- An all-atom protein structure dataset for machine learning.☆363Mar 16, 2024Updated 2 years ago
- A generative model for programmable protein design☆809Apr 11, 2024Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Generative Models for Graph-Based Protein Design☆288Dec 24, 2020Updated 5 years ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆331Oct 28, 2024Updated last year
- Generation of protein sequences and evolutionary alignments via discrete diffusion models☆666Jan 15, 2026Updated 2 months ago
- trRosetta for protein design☆185May 15, 2021Updated 4 years ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆186Apr 21, 2024Updated last year
- Official repository for the ProteinGym benchmarks☆413Mar 25, 2026Updated 2 weeks ago
- Official release of the ProGen models☆697Aug 4, 2023Updated 2 years ago
- Diffusion-based all-atom protein generative model.☆233Aug 27, 2025Updated 7 months ago
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆276Feb 14, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆2,291Mar 19, 2026Updated 3 weeks ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆166Aug 24, 2023Updated 2 years ago
- Evolutionary couplings from protein and RNA sequence alignments☆300Oct 23, 2025Updated 5 months ago
- Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure☆320Nov 15, 2025Updated 4 months ago
- Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking☆1,479May 2, 2025Updated 11 months ago
- ☆192Feb 8, 2022Updated 4 years ago
- Toward High-Accuracy Open-Source Biomolecular Structure Prediction.☆1,794Updated this week