MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
☆772Jun 19, 2024Updated 2 years ago
Alternatives and similar repositories for masif
Users that are interested in masif are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆256May 22, 2023Updated 3 years ago
- Making Protein Design accessible to all via Google Colab!☆937Updated this week
- Masif seed paper repository☆174Sep 22, 2025Updated 11 months ago
- Generative Models for Graph-Based Protein Design☆291Dec 24, 2020Updated 5 years ago
- Code for the ProteinMPNN paper☆1,839Aug 14, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆423Feb 26, 2026Updated 6 months ago
- EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein☆546Feb 19, 2025Updated last year
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,170Feb 7, 2024Updated 2 years ago
- Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design☆709Aug 13, 2026Updated 2 weeks ago
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆179Jun 25, 2026Updated 2 months ago
- Listing of papers about machine learning for proteins.☆1,715May 31, 2024Updated 2 years ago
- EquiDock: geometric deep learning for fast rigid 3D protein-protein docking☆260Sep 22, 2023Updated 2 years ago
- Making Protein folding accessible to all!☆2,899Updated this week
- Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Schake,…☆712Jul 3, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A deep learning framework for molecular docking☆967Jun 29, 2026Updated 2 months ago
- Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking☆1,570May 2, 2025Updated last year
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆241Dec 29, 2023Updated 2 years ago
- Database of Interacting Protein Structures (DIPS)☆106Jan 26, 2024Updated 2 years ago
- Code for ColabDock paper☆157May 1, 2025Updated last year
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆21Feb 14, 2020Updated 6 years ago
- ☆628Feb 6, 2025Updated last year
- Geometric deep learning method to predict protein binding interfaces from a protein structure.☆169Oct 11, 2023Updated 2 years ago
- ATOM3D: tasks on molecules in three dimensions☆319Mar 2, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Protein hallucination and inpainting with RoseTTAFold☆285Mar 30, 2023Updated 3 years ago
- List of papers about Proteins Design using Deep Learning☆1,973Aug 15, 2026Updated 2 weeks ago
- ☆818May 18, 2026Updated 3 months ago
- Code for running RFdiffusion☆3,035Jul 15, 2026Updated last month
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆332Oct 28, 2024Updated last year
- PDBFixer fixes problems in PDB files☆671Mar 10, 2026Updated 5 months ago
- open source repository☆149Nov 30, 2023Updated 2 years ago
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,287Aug 24, 2026Updated last week
- Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2☆3,421Dec 16, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- trRosetta for protein design☆183May 15, 2021Updated 5 years ago
- Comprehensive library for fast, GPU accelerated molecular gridding for deep learning workflows☆156Nov 3, 2025Updated 9 months ago
- ☆146Jun 18, 2025Updated last year
- DeeplyTough: Learning Structural Comparison of Protein Binding Sites☆168Apr 7, 2023Updated 3 years ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆744Dec 11, 2022Updated 3 years ago
- Protein Graph Library☆1,192Updated this week
- Sidechain conditioning and modeling for full-atom protein sequence design☆149Nov 11, 2025Updated 9 months ago