Alternatives and similar repositories for masif:

Users that are interested in masif are comparing it to the libraries listed below

• HannesStark / EquiBind
  EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein
  ☆487Updated last year
• RosettaCommons / PyRosetta.notebooks
  Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
  ☆534Updated 6 months ago
• churchlab / UniRep
  UniRep model, usage, and examples.
  ☆348Updated 2 years ago
• pharmai / plip
  Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme …
  ☆485Updated 3 weeks ago
• RosettaCommons / RFDesign
  Protein hallucination and inpainting with RoseTTAFold
  ☆250Updated last year
• gnina / gnina
  A deep learning framework for molecular docking
  ☆664Updated 2 months ago
• martinpacesa / BindCraft
  User friendly and accurate binder design pipeline
  ☆440Updated last month
• octavian-ganea / equidock_public
  EquiDock: geometric deep learning for fast rigid 3D protein-protein docking
  ☆236Updated last year
• Graylab / IgFold
  Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
  ☆340Updated last year
• baker-laboratory / rf_diffusion_all_atom
  Public RFDiffusionAA repo
  ☆356Updated 7 months ago
• flatironinstitute / DeepFRI
  Deep functional residue identification
  ☆312Updated last year
• FreyrS / dMaSIF
  ☆198Updated last year
• luost26 / diffab
  ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)
  ☆303Updated last year
• RosettaCommons / protein_generator
  Joint sequence and structure generation with RoseTTAFold sequence space diffusion
  ☆301Updated 3 months ago
• sokrypton / ColabDesign
  Making Protein Design accessible to all via Google Colab!
  ☆675Updated 2 months ago
• pablo-arantes / making-it-rain
  Cloud-based molecular simulations for everyone
  ☆414Updated 3 weeks ago
• biolists / folding_tools
  A collection of *fold* tools
  ☆293Updated 4 months ago
• sacdallago / bio_embeddings
  Get protein embeddings from protein sequences
  ☆475Updated last year
• nrbennet / dl_binder_design
  ☆279Updated 6 months ago
• BenevolentAI / guacamol
  Benchmarks for generative chemistry
  ☆430Updated last year
• bjornwallner / DockQ
  DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models
  ☆246Updated 3 weeks ago
• zrqiao / NeuralPLexer
  NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model
  ☆278Updated 9 months ago
• Discngine / fpocket
  fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scien…
  ☆320Updated 5 months ago
• openmm / pdbfixer
  PDBFixer fixes problems in PDB files
  ☆513Updated last week
• MolecularAI / Reinvent
  ☆346Updated last year
• YoshitakaMo / localcolabfold
  ColabFold on your local PC
  ☆647Updated 3 weeks ago
• RosettaCommons / DeepAb
  Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.
  ☆156Updated 2 years ago
• dauparas / LigandMPNN
  ☆272Updated last week
• tbepler / protein-sequence-embedding-iclr2019
  Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019
  ☆259Updated 3 years ago
• AngelRuizMoreno / Jupyter_Dock
  Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting f…
  ☆263Updated last year