MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
☆742Jun 19, 2024Updated last year
Alternatives and similar repositories for masif
Users that are interested in masif are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆244May 22, 2023Updated 2 years ago
- Making Protein Design accessible to all via Google Colab!☆903Apr 6, 2026Updated last week
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆379Feb 26, 2026Updated last month
- Masif seed paper repository☆173Sep 22, 2025Updated 6 months ago
- ☆563Feb 6, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Generative Models for Graph-Based Protein Design☆288Dec 24, 2020Updated 5 years ago
- Code for the ProteinMPNN paper☆1,694Aug 14, 2024Updated last year
- EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein☆542Feb 19, 2025Updated last year
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,034Feb 7, 2024Updated 2 years ago
- Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design☆681Feb 27, 2026Updated last month
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆174Feb 6, 2026Updated 2 months ago
- EquiDock: geometric deep learning for fast rigid 3D protein-protein docking☆257Sep 22, 2023Updated 2 years ago
- Listing of papers about machine learning for proteins.☆1,697May 31, 2024Updated last year
- Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Schake,…☆668Oct 30, 2025Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A deep learning framework for molecular docking☆890Feb 26, 2026Updated last month
- Making Protein folding accessible to all!☆2,723Mar 17, 2026Updated 3 weeks ago
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆233Dec 29, 2023Updated 2 years ago
- Database of Interacting Protein Structures (DIPS)☆105Jan 26, 2024Updated 2 years ago
- Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking☆1,479May 2, 2025Updated 11 months ago
- Code for ColabDock paper☆153May 1, 2025Updated 11 months ago
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆20Feb 14, 2020Updated 6 years ago
- Geometric deep learning method to predict protein binding interfaces from a protein structure.☆156Oct 11, 2023Updated 2 years ago
- ☆803May 27, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ATOM3D: tasks on molecules in three dimensions☆318Mar 2, 2023Updated 3 years ago
- Code for running RFdiffusion☆2,826Nov 20, 2025Updated 4 months ago
- List of papers about Proteins Design using Deep Learning☆1,917Updated this week
- Protein hallucination and inpainting with RoseTTAFold☆281Mar 30, 2023Updated 3 years ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆331Oct 28, 2024Updated last year
- open source repository☆147Nov 30, 2023Updated 2 years ago
- PDBFixer fixes problems in PDB files☆639Mar 10, 2026Updated last month
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,210Mar 10, 2026Updated last month
- Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2☆3,336Dec 16, 2025Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Comprehensive library for fast, GPU accelerated molecular gridding for deep learning workflows☆156Nov 3, 2025Updated 5 months ago
- trRosetta for protein design☆185May 15, 2021Updated 4 years ago
- Protein Graph Library☆1,169Mar 20, 2026Updated 3 weeks ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆736Dec 11, 2022Updated 3 years ago
- DeeplyTough: Learning Structural Comparison of Protein Binding Sites☆167Apr 7, 2023Updated 3 years ago
- ☆143Jun 18, 2025Updated 9 months ago
- Chai-1, SOTA model for biomolecular structure prediction☆1,913Updated this week