Alternatives and similar repositories for rgn

Users that are interested in rgn are comparing it to the libraries listed below

• biolib / openprotein
  A PyTorch framework for prediction of tertiary protein structure
  ☆191Updated 4 years ago
• aqlaboratory / proteinnet
  Standardized data set for machine learning of protein structure
  ☆906Updated 5 years ago
• dellacortelab / prospr
  ProSPr: Protein Structure Prediction
  ☆420Updated 3 years ago
• churchlab / UniRep
  UniRep model, usage, and examples.
  ☆359Updated 3 years ago
• tbepler / protein-sequence-embedding-iclr2019
  Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019
  ☆262Updated 4 years ago
• songlab-cal / tape-neurips2019
  Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…
  ☆121Updated 4 years ago
• LPDI-EPFL / masif
  MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
  ☆722Updated last year
• insilicomedicine / GENTRL
  Generative Tensorial Reinforcement Learning (GENTRL) model
  ☆631Updated last year
• salesforce / provis
  Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."
  ☆305Updated 8 months ago
• gjoni / trRosetta
  A package to predict protein inter-residue geometries from sequence data
  ☆222Updated 4 years ago
• Urinx / alphafold_pytorch
  An implementation of the DeepMind's AlphaFold based on PyTorch for research
  ☆401Updated 5 years ago
• jonathanking / sidechainnet
  An all-atom protein structure dataset for machine learning.
  ☆358Updated last year
• debbiemarkslab / DeepSequence
  A generative latent variable model for biological sequence families.
  ☆247Updated 3 years ago
• sacdallago / bio_embeddings
  Get protein embeddings from protein sequences
  ☆504Updated 2 years ago
• lamoureux-lab / TorchProteinLibrary
  PyTorch library of layers acting on protein representations
  ☆119Updated last year
• gjoni / trDesign
  trRosetta for protein design
  ☆183Updated 4 years ago
• soedinglab / hh-suite
  Remote protein homology detection suite.
  ☆610Updated 5 months ago
• soedinglab / CCMpred
  Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
  ☆112Updated 2 years ago
• samsinai / FLEXS
  Fitness landscape exploration sandbox for biological sequence design.
  ☆170Updated 2 years ago
• fhalab / embeddings_reproduction
  ☆127Updated 4 years ago
• debbiemarkslab / EVcouplings
  Evolutionary couplings from protein and RNA sequence alignments
  ☆297Updated 3 months ago
• songlab-cal / tape
  Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…
  ☆729Updated 3 years ago
• flatironinstitute / DeepFRI
  Deep functional residue identification
  ☆344Updated 2 years ago
• Biomatter-Designs / ProteinGAN
  ☆191Updated 3 years ago
• ElArkk / jax-unirep
  Reimplementation of the UniRep protein featurization model.
  ☆108Updated last year
• LucaAngioloni / ProteinSecondaryStructure-CNN
  Protein Secondary Structure predictor using Convolutional Neural Networks
  ☆112Updated last month
• biolists / folding_tools
  A collection of *fold* tools
  ☆301Updated 5 months ago
• Rostlab / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆122Updated 5 years ago
• samsinai / VAE_protein_function
  Protein function prediction using a variational autoencoder
  ☆94Updated 7 years ago
• LinearFold / LinearFold
  The new source code of the LinearFold, linear-time prediction for RNA secondary structures
  ☆187Updated last year