Alternatives and similar repositories for protein-sequence-embedding-iclr2019

Users that are interested in protein-sequence-embedding-iclr2019 are comparing it to the libraries listed below

• churchlab / UniRep
  UniRep model, usage, and examples.
  ☆358Updated 3 years ago
• gjoni / trRosetta
  A package to predict protein inter-residue geometries from sequence data
  ☆220Updated 4 years ago
• songlab-cal / tape-neurips2019
  Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…
  ☆121Updated 4 years ago
• fhalab / embeddings_reproduction
  ☆127Updated 4 years ago
• Biomatter-Designs / ProteinGAN
  ☆191Updated 3 years ago
• debbiemarkslab / DeepSequence
  A generative latent variable model for biological sequence families.
  ☆244Updated 3 years ago
• sacdallago / bio_embeddings
  Get protein embeddings from protein sequences
  ☆505Updated 2 years ago
• flatironinstitute / DeepFRI
  Deep functional residue identification
  ☆343Updated 2 years ago
• jingraham / neurips19-graph-protein-design
  Generative Models for Graph-Based Protein Design
  ☆282Updated 5 years ago
• Shen-Lab / DeepAffinity
  Protein-compound affinity prediction through unified RNN-CNN
  ☆151Updated last year
• Rostlab / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆122Updated 5 years ago
• tbepler / prose
  Multi-task and masked language model-based protein sequence embedding models.
  ☆104Updated 4 years ago
• gjoni / trDesign
  trRosetta for protein design
  ☆183Updated 4 years ago
• songlab-cal / tape
  Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…
  ☆725Updated 3 years ago
• soedinglab / CCMpred
  Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
  ☆111Updated 2 years ago
• biolib / openprotein
  A PyTorch framework for prediction of tertiary protein structure
  ☆191Updated 4 years ago
• salesforce / provis
  Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."
  ☆304Updated 7 months ago
• LPDI-EPFL / masif
  MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
  ☆710Updated last year
• microsoft / protein-sequence-models
  ☆253Updated last year
• biolists / folding_tools
  A collection of *fold* tools
  ☆301Updated 4 months ago
• RosettaCommons / RFDesign
  Protein hallucination and inpainting with RoseTTAFold
  ☆275Updated 2 years ago
• jonathanking / sidechainnet
  An all-atom protein structure dataset for machine learning.
  ☆356Updated last year
• fouticus / pipgcn
  Protein Interface Prediction using Graph Convolutional Networks
  ☆93Updated 5 years ago
• psipred / protein-vae
  Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies
  ☆94Updated 2 years ago
• DeepRank / deeprank
  This repository has been integrated in https://github.com/DeepRank/deeprank2
  ☆146Updated 2 years ago
• lucidrains / protein-bert-pytorch
  Implementation of ProteinBERT in Pytorch
  ☆164Updated 4 years ago
• ml4bio / e2efold
  pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"
  ☆118Updated last year
• FreyrS / dMaSIF
  ☆232Updated 2 years ago
• muhaochen / seq_ppi
  This is the repository for PIPR. This repository contains the source code and links to some datasets used in the ISMB/ECCB-2019 paper "Mu…
  ☆107Updated 2 years ago
• octavian-ganea / equidock_public
  EquiDock: geometric deep learning for fast rigid 3D protein-protein docking
  ☆254Updated 2 years ago