tbepler / protein-sequence-embedding-iclr2019Links
Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019
☆261Updated 4 years ago
Alternatives and similar repositories for protein-sequence-embedding-iclr2019
Users that are interested in protein-sequence-embedding-iclr2019 are comparing it to the libraries listed below
Sorting:
- UniRep model, usage, and examples.☆358Updated 3 years ago
- ☆190Updated 3 years ago
- A package to predict protein inter-residue geometries from sequence data☆219Updated 4 years ago
- ☆127Updated 4 years ago
- Get protein embeddings from protein sequences☆505Updated 2 years ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆121Updated 4 years ago
- Deep functional residue identification☆339Updated 2 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆122Updated 5 years ago
- Generative Models for Graph-Based Protein Design☆282Updated 4 years ago
- Protein-compound affinity prediction through unified RNN-CNN☆151Updated last year
- trRosetta for protein design☆183Updated 4 years ago
- Multi-task and masked language model-based protein sequence embedding models.☆104Updated 4 years ago
- A generative latent variable model for biological sequence families.☆242Updated 3 years ago
- Protein Interface Prediction using Graph Convolutional Networks☆93Updated 5 years ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆724Updated 2 years ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆110Updated 2 years ago
- pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"☆118Updated last year
- A PyTorch framework for prediction of tertiary protein structure☆191Updated 4 years ago
- Deep residual neural network for protein contact/distance prediction developed by Xu group☆79Updated 5 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆75Updated 4 years ago
- Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."☆303Updated 7 months ago
- An all-atom protein structure dataset for machine learning.☆356Updated last year
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆705Updated last year
- This is the repository for PIPR. This repository contains the source code and links to some datasets used in the ISMB/ECCB-2019 paper "Mu…☆106Updated 2 years ago
- ☆253Updated last year
- Predicting protein structure through sequence modeling☆112Updated 5 years ago
- This repository has been integrated in https://github.com/DeepRank/deeprank2☆146Updated 2 years ago
- ☆230Updated 2 years ago
- Protein hallucination and inpainting with RoseTTAFold☆274Updated 2 years ago
- A collection of *fold* tools☆300Updated 4 months ago