samsinai / FLEXSLinks
Fitness landscape exploration sandbox for biological sequence design.
☆165Updated 2 years ago
Alternatives and similar repositories for FLEXS
Users that are interested in FLEXS are comparing it to the libraries listed below
Sorting:
- Unconstrained lattice antibody-antigen bindings generator☆110Updated last year
- A generative latent variable model for biological sequence families.☆233Updated 3 years ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆129Updated 3 years ago
- Reimplementation of the UniRep protein featurization model.☆107Updated 11 months ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆104Updated 10 months ago
- ☆252Updated last year
- trRosetta for protein design☆182Updated 4 years ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆88Updated 2 years ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆159Updated 2 years ago
- ☆58Updated 2 years ago
- ☆110Updated 3 years ago
- AbLang: A language model for antibodies☆146Updated last year
- Generative Language Modeling for Antibody Design☆161Updated 10 months ago
- ☆192Updated 3 years ago
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆125Updated last week
- Protein design and variant prediction using autoregressive generative models☆109Updated last year
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆134Updated 4 months ago
- ☆109Updated last month
- Attempt at reproduction of AlphaFold2☆97Updated 10 months ago
- A package to predict protein inter-residue geometries from sequence data☆215Updated 3 years ago
- ☆68Updated 3 years ago
- Mono-repo for protein utilities.☆19Updated 3 years ago
- Evolutionary couplings from protein and RNA sequence alignments☆275Updated 5 months ago
- An all-atom protein structure dataset for machine learning.☆355Updated last year
- Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation☆123Updated 2 years ago
- bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.☆154Updated last year
- Efficient evolution from protein language models☆212Updated 2 years ago
- ☆107Updated last year
- Official repository for the ProteinGym benchmarks☆340Updated last month
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆110Updated last year