samsinai / FLEXSLinks
Fitness landscape exploration sandbox for biological sequence design.
☆171Updated 2 years ago
Alternatives and similar repositories for FLEXS
Users that are interested in FLEXS are comparing it to the libraries listed below
Sorting:
- Unconstrained lattice antibody-antigen bindings generator☆111Updated last month
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆130Updated 4 years ago
- Reimplementation of the UniRep protein featurization model.☆108Updated last year
- A generative latent variable model for biological sequence families.☆244Updated 3 years ago
- trRosetta for protein design☆183Updated 4 years ago
- ☆253Updated last year
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆110Updated last year
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆161Updated 2 years ago
- ☆59Updated 3 years ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆94Updated 2 years ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆146Updated 8 months ago
- ☆111Updated 3 years ago
- Evolutionary couplings from protein and RNA sequence alignments☆294Updated 2 months ago
- AbLang: A language model for antibodies☆155Updated 2 years ago
- Mono-repo for protein utilities.☆21Updated 4 years ago
- ☆74Updated 4 years ago
- Efficient evolution from protein language models☆218Updated 2 years ago
- Protein design and variant prediction using autoregressive generative models☆117Updated last year
- ☆108Updated 2 years ago
- ☆117Updated 5 months ago
- bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.☆155Updated 2 years ago
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆140Updated 2 weeks ago
- Compressing protein structures effectively with torsion angles☆183Updated 2 weeks ago
- ☆232Updated 2 years ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆111Updated 2 years ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆125Updated last month
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆263Updated 8 months ago
- A package to predict protein inter-residue geometries from sequence data☆220Updated 4 years ago
- Generative Language Modeling for Antibody Design☆176Updated last year
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆87Updated last year