samsinai / VAE_protein_function
Protein function prediction using a variational autoencoder
☆93Updated 7 years ago
Alternatives and similar repositories for VAE_protein_function:
Users that are interested in VAE_protein_function are comparing it to the libraries listed below
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆84Updated last year
- Analysis and figure code from Alley et al. 2019.☆58Updated last year
- ☆127Updated 4 years ago
- A generative latent variable model for biological sequence families.☆214Updated 3 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆72Updated 4 years ago
- ☆55Updated 5 years ago
- Protein sequence classification with self-supervised pretraining☆82Updated 3 years ago
- Reimplementation of the UniRep protein featurization model.☆104Updated 6 months ago
- ☆108Updated 3 years ago
- Protein-compound affinity prediction through unified RNN-CNN☆140Updated 8 months ago
- A Python package for extracting protein sequence features☆58Updated 2 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆71Updated 10 months ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆119Updated 4 years ago
- ☆59Updated 7 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆57Updated 3 years ago
- Paratope Prediction using Deep Learning☆59Updated last year
- Multi-task and masked language model-based protein sequence embedding models.☆99Updated 3 years ago
- PaccMann models for protein language modeling☆42Updated 3 years ago
- ☆56Updated 2 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆56Updated 3 years ago
- PDNET: A fully open-source framework for deep learning protein real-valued distances☆34Updated 3 years ago
- Mutation effects predicted from sequence co-variation☆63Updated 7 years ago
- PyTorch library of layers acting on protein representations☆117Updated 8 months ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆107Updated last year
- A new approach for representing biological sequences☆99Updated 6 months ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆123Updated 3 years ago
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆53Updated 2 years ago
- Unconstrained lattice antibody-antigen bindings generator☆107Updated 8 months ago
- Fully convolutional neural networks for protein residue-residue contact prediction☆44Updated 5 years ago
- Collecting AMP MIC data from different sources, then running a GAN to output promising sequences☆69Updated 7 months ago