J-SNACKKB / FLIP
A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
☆97Updated 5 months ago
Alternatives and similar repositories for FLIP:
Users that are interested in FLIP are comparing it to the libraries listed below
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆106Updated last week
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆112Updated 3 months ago
- Official repository of EnzymeFlow☆82Updated 3 months ago
- ☆105Updated last year
- A compilation of deep learning methods for protein design☆97Updated 2 years ago
- Generative Language Modeling for Antibody Design☆142Updated 5 months ago
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆106Updated 4 months ago
- ☆83Updated 5 months ago
- Fitness landscapes for antibodies☆66Updated 2 months ago
- ☆88Updated 4 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆67Updated 4 months ago
- ☆110Updated last week
- Antibody-Antigen Docking and Affinity Benchmark☆70Updated 4 years ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆102Updated 3 weeks ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆152Updated last month
- Improved antibody structure-based design using inverse folding☆99Updated last week
- ☆100Updated 2 years ago
- Diffusion-based all-atom protein generative model.☆183Updated last month
- AbLang: A language model for antibodies☆137Updated last year
- Predict the structure of immune receptor proteins☆132Updated last month
- Structure-conditioned masked language modeling for protein sequence design☆62Updated last year
- Dataset and package for working with protein-protein interactions in 3D☆91Updated last month
- Aligning protein generative models with experimental fitness☆88Updated 5 months ago
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆202Updated last year
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆123Updated 3 years ago
- ☆61Updated 3 years ago
- ☆66Updated last year
- Geometric deep learning method to predict protein binding interfaces from a protein structure.☆122Updated last year
- ☆121Updated last year