A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
☆137Apr 23, 2026Updated 3 months ago
Alternatives and similar repositories for FLIP
Users that are interested in FLIP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆259Jul 31, 2024Updated 2 years ago
- Official repository for the ProteinGym benchmarks☆458Mar 25, 2026Updated 4 months ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆741Dec 11, 2022Updated 3 years ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆36Jun 1, 2022Updated 4 years ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆170Aug 24, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)☆104Mar 18, 2023Updated 3 years ago
- Gibbs sampling for generating protein sequences☆58Jan 17, 2025Updated last year
- A collection of *fold* tools☆304Aug 8, 2025Updated last year
- Implementation of Protein Invariant Point Packer (PIPPack)☆37May 28, 2024Updated 2 years ago
- ☆114Jul 20, 2026Updated 3 weeks ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆135Nov 19, 2025Updated 8 months ago
- Diffusion-based all-atom protein generative model.☆237Aug 27, 2025Updated 11 months ago
- ☆218Sep 24, 2024Updated last year
- Ankh: Optimized Protein Language Model☆249Jun 16, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- List of papers about Proteins Design using Deep Learning☆1,956Aug 2, 2026Updated last week
- Official implementation of pre-training via denoising for TorchMD-NET☆99Mar 2, 2023Updated 3 years ago
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆270Jul 24, 2025Updated last year
- Metrics to evaluate distributional coverage of generative models of protein structures.☆21Aug 13, 2025Updated 11 months ago
- Fitness landscape exploration sandbox for biological sequence design.☆175Feb 16, 2023Updated 3 years ago
- Official release of the ProGen models☆705Jun 2, 2026Updated 2 months ago
- Evolutionary couplings from protein and RNA sequence alignments☆313Apr 20, 2026Updated 3 months ago
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆41Jul 9, 2023Updated 3 years ago
- Aligning protein generative models with experimental fitness☆124Mar 12, 2026Updated 4 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Efficient evolution from protein language models☆226Aug 26, 2023Updated 2 years ago
- ☆31Dec 12, 2024Updated last year
- Listing of papers about machine learning for proteins.☆1,713May 31, 2024Updated 2 years ago
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆19Feb 8, 2024Updated 2 years ago
- The official code for "TaxDiff: Taxonomic-Guided Diffusion Model for Protein Sequence Generation"☆75Aug 23, 2024Updated last year
- [ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding☆152Mar 10, 2025Updated last year
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆97Jul 20, 2026Updated 3 weeks ago
- SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.☆20Jan 17, 2024Updated 2 years ago
- Benchmarking uncertainty quantification methods on proteins.☆22Jan 28, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Get protein embeddings from protein sequences☆508Apr 28, 2023Updated 3 years ago
- ☆81Oct 27, 2021Updated 4 years ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,321May 22, 2025Updated last year
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆155Apr 16, 2025Updated last year
- This repository implements Gibbs sampling with Graph-based Smoothing☆42May 29, 2024Updated 2 years ago
- A compilation of deep learning methods for protein design☆95Nov 5, 2022Updated 3 years ago
- Compressing protein structures effectively with torsion angles☆195Aug 3, 2026Updated last week