A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
☆140Apr 23, 2026Updated 4 months ago
Alternatives and similar repositories for FLIP
Users that are interested in FLIP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆260Jul 31, 2024Updated 2 years ago
- Official repository for the ProteinGym benchmarks☆467Mar 25, 2026Updated 5 months ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆744Dec 11, 2022Updated 3 years ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆36Jun 1, 2022Updated 4 years ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆170Aug 24, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)☆105Mar 18, 2023Updated 3 years ago
- Gibbs sampling for generating protein sequences☆58Jan 17, 2025Updated last year
- A collection of *fold* tools☆303Aug 8, 2025Updated last year
- Implementation of Protein Invariant Point Packer (PIPPack)☆37May 28, 2024Updated 2 years ago
- ☆115Jul 20, 2026Updated last month
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆135Nov 19, 2025Updated 9 months ago
- Diffusion-based all-atom protein generative model.☆238Aug 27, 2025Updated last year
- ☆218Sep 24, 2024Updated last year
- Ankh: Optimized Protein Language Model☆250Jun 16, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- List of papers about Proteins Design using Deep Learning☆1,970Aug 15, 2026Updated 2 weeks ago
- Official implementation of pre-training via denoising for TorchMD-NET☆99Mar 2, 2023Updated 3 years ago
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆272Jul 24, 2025Updated last year
- Metrics to evaluate distributional coverage of generative models of protein structures.☆21Aug 13, 2025Updated last year
- Fitness landscape exploration sandbox for biological sequence design.☆176Feb 16, 2023Updated 3 years ago
- Official release of the ProGen models☆705Jun 2, 2026Updated 2 months ago
- Evolutionary couplings from protein and RNA sequence alignments☆315Apr 20, 2026Updated 4 months ago
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆41Jul 9, 2023Updated 3 years ago
- Aligning protein generative models with experimental fitness☆143Mar 12, 2026Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Efficient evolution from protein language models☆227Aug 26, 2023Updated 3 years ago
- ☆31Dec 12, 2024Updated last year
- Listing of papers about machine learning for proteins.☆1,715May 31, 2024Updated 2 years ago
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆19Feb 8, 2024Updated 2 years ago
- The official code for "TaxDiff: Taxonomic-Guided Diffusion Model for Protein Sequence Generation"☆75Aug 23, 2024Updated 2 years ago
- [ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding☆153Mar 10, 2025Updated last year
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆97Jul 20, 2026Updated last month
- SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.☆20Jan 17, 2024Updated 2 years ago
- Benchmarking uncertainty quantification methods on proteins.☆22Jan 28, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Get protein embeddings from protein sequences☆509Apr 28, 2023Updated 3 years ago
- ☆82Oct 27, 2021Updated 4 years ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,323May 22, 2025Updated last year
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆155Apr 16, 2025Updated last year
- This repository implements Gibbs sampling with Graph-based Smoothing☆42May 29, 2024Updated 2 years ago
- A compilation of deep learning methods for protein design☆95Nov 5, 2022Updated 3 years ago
- Compressing protein structures effectively with torsion angles☆194Aug 3, 2026Updated 3 weeks ago