Alternatives and similar repositories for embeddings_reproduction:

Users that are interested in embeddings_reproduction are comparing it to the libraries listed below

• mheinzinger / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆72Updated 4 years ago
• soedinglab / CCMpred
  Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
  ☆107Updated last year
• gjoni / trDesign
  trRosetta for protein design
  ☆178Updated 3 years ago
• Rostlab / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆119Updated 4 years ago
• debbiemarkslab / DeepSequence
  A generative latent variable model for biological sequence families.
  ☆214Updated 3 years ago
• ElArkk / jax-unirep
  Reimplementation of the UniRep protein featurization model.
  ☆106Updated 7 months ago
• churchlab / UniRep-analysis
  Analysis and figure code from Alley et al. 2019.
  ☆58Updated 2 years ago
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆124Updated 3 years ago
• RosettaCommons / trRosetta2
  Repository for publicly available deep learning models developed in Rosetta community
  ☆114Updated 3 years ago
• j3xugit / RaptorX-3DModeling
  Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…
  ☆100Updated 3 years ago
• tbepler / prose
  Multi-task and masked language model-based protein sequence embedding models.
  ☆100Updated 3 years ago
• Merck / BioPhi
  BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…
  ☆177Updated 7 months ago
• sokrypton / GREMLIN_CPP
  GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!
  ☆53Updated 2 years ago
• Kortemme-Lab / flex_ddG_tutorial
  ☆107Updated 2 years ago
• RosettaCommons / RFDesign
  Protein hallucination and inpainting with RoseTTAFold
  ☆256Updated 2 years ago
• debbiemarkslab / EVcouplings
  Evolutionary couplings from protein and RNA sequence alignments
  ☆262Updated last month
• eliberis / parapred
  Paratope Prediction using Deep Learning
  ☆59Updated last year
• psipred / protein-vae
  Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies
  ☆85Updated last year
• steineggerlab / foldcomp
  Compressing protein structures effectively with torsion angles
  ☆172Updated last week
• RosettaCommons / DeepAb
  Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.
  ☆158Updated 2 years ago
• PaccMann / paccmann_proteomics
  PaccMann models for protein language modeling
  ☆42Updated 3 years ago
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆111Updated last year
• oxpig / AbLang
  AbLang: A language model for antibodies
  ☆138Updated last year
• haddocking / prodigy
  Predict the binding affinity of protein-protein complexes from structural data
  ☆122Updated this week
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆148Updated last year
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆198Updated last year
• j3xugit / RaptorX-Contact
  Deep residual neural network for protein contact/distance prediction developed by Xu group
  ☆78Updated 4 years ago
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆94Updated 2 months ago
• csi-greifflab / Absolut
  Unconstrained lattice antibody-antigen bindings generator
  ☆107Updated 9 months ago
• aqlaboratory / rgn2
  ☆104Updated last year