Alternatives and similar repositories for MLDE

Users that are interested in MLDE are comparing it to the libraries listed below

• gjoni / trDesign
  trRosetta for protein design
  ☆183Updated 4 years ago
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆166Updated last month
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆166Updated last year
• varun-shanker / structural-evolution
  ☆116Updated last year
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆217Updated 2 years ago
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆73Updated 4 years ago
• oxpig / AbLang
  AbLang: A language model for antibodies
  ☆154Updated 2 years ago
• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆149Updated 7 months ago
• Graylab / IgLM
  Generative Language Modeling for Antibody Design
  ☆173Updated last year
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆110Updated 6 months ago
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆124Updated 2 years ago
• Merck / BioPhi
  BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…
  ☆213Updated 6 months ago
• Kortemme-Lab / flex_ddG_tutorial
  ☆134Updated 3 years ago
• aqlaboratory / rgn2
  ☆108Updated 2 years ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 3 years ago
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆109Updated last year
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆167Updated 2 months ago
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆92Updated 3 months ago
• rifdock / rifdock
  Rifdock Library for Conformational Search
  ☆165Updated last year
• csi-greifflab / Absolut
  Unconstrained lattice antibody-antigen bindings generator
  ☆111Updated 3 weeks ago
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆127Updated 2 weeks ago
• RosettaCommons / DeepAb
  Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.
  ☆167Updated 3 years ago
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆165Updated 2 months ago
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆145Updated this week
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆213Updated 4 months ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆125Updated 3 weeks ago
• patrickbryant1 / EvoBind
  In silico directed evolution of peptide binders with AlphaFold
  ☆248Updated 3 weeks ago
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆61Updated 2 years ago
• ikalvet / heme_binder_diffusion
  ☆142Updated 4 months ago
• oxpig / ANARCI
  Antibody Numbering and Antigen Receptor ClassIfication
  ☆250Updated last year