Alternatives and similar repositories for MLDE:

Users that are interested in MLDE are comparing it to the libraries listed below

• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆110Updated last year
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆132Updated last month
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆192Updated last year
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆147Updated last year
• Merck / BioPhi
  BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…
  ☆176Updated 6 months ago
• ikalvet / heme_binder_diffusion
  ☆114Updated 5 months ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 2 years ago
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆107Updated 2 months ago
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆149Updated 3 weeks ago
• RosettaCommons / DeepAb
  Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.
  ☆159Updated 2 years ago
• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆137Updated 5 months ago
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆94Updated last month
• rifdock / rifdock
  Rifdock Library for Conformational Search
  ☆152Updated 10 months ago
• Kortemme-Lab / flex_ddG_tutorial
  ☆104Updated 2 years ago
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆152Updated last month
• gjoni / trDesign
  trRosetta for protein design
  ☆177Updated 3 years ago
• varun-shanker / structural-evolution
  ☆98Updated 8 months ago
• oxpig / ANARCI
  Antibody Numbering and Antigen Receptor ClassIfication
  ☆205Updated 10 months ago
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆61Updated 3 years ago
• oxpig / AbLang
  AbLang: A language model for antibodies
  ☆137Updated last year
• jertubiana / ScanNet
  ☆121Updated last year
• martinez-zacharya / TRILL
  Sandbox for Deep-Learning based Computational Protein Design
  ☆109Updated last month
• bjornwallner / DockQ
  DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models
  ☆261Updated 2 months ago
• pylelab / USalign
  Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
  ☆128Updated last month
• mheinzinger / ProstT5
  Bilingual Language Model for Protein Sequence and Structure
  ☆225Updated 2 months ago
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆97Updated 5 months ago
• RosettaCommons / RFDesign
  Protein hallucination and inpainting with RoseTTAFold
  ☆253Updated last year
• patrickbryant1 / EvoBind
  In silico directed evolution of peptide binders with AlphaFold
  ☆151Updated last month
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆58Updated last year