fhalab / MLDELinks
A machine-learning package for navigating combinatorial protein fitness landscapes.
☆126Updated 3 years ago
Alternatives and similar repositories for MLDE
Users that are interested in MLDE are comparing it to the libraries listed below
Sorting:
- Efficient evolution from protein language models☆210Updated last year
- ☆109Updated last year
- trRosetta for protein design☆182Updated 4 years ago
- Predict the structure of immune receptor proteins☆144Updated 5 months ago
- ☆66Updated 3 years ago
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆152Updated last year
- Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.☆160Updated 2 years ago
- Code for ColabDock paper☆141Updated 2 months ago
- Tutorials, cheat sheets, and other resources for computational methods for protein design.☆113Updated last year
- Convenience Python APIs for antibody numbering using ANARCI☆99Updated last month
- AbLang: A language model for antibodies☆143Updated last year
- A compilation of deep learning methods for protein design☆97Updated 2 years ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆179Updated 5 months ago
- Generative Language Modeling for Antibody Design☆157Updated 9 months ago
- ☆107Updated last year
- Masif seed paper repository☆154Updated 2 years ago
- Protein folding in Pymol☆109Updated 5 months ago
- BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…☆196Updated 2 months ago
- ☆117Updated 2 years ago
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆158Updated 4 months ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆114Updated 4 months ago
- In silico directed evolution of peptide binders with AlphaFold☆209Updated last month
- Improved antibody structure-based design using inverse folding☆127Updated 2 months ago
- Fitness landscapes for antibodies☆72Updated 6 months ago
- Protein-ligand structure prediction☆219Updated 11 months ago
- Unconstrained lattice antibody-antigen bindings generator☆110Updated last year
- ☆128Updated 3 weeks ago
- ☆195Updated 2 months ago
- ☆133Updated 9 months ago
- open source code for Tencent tFold☆104Updated 4 months ago