churchlab / UniRep-analysisLinks
Analysis and figure code from Alley et al. 2019.
☆60Updated 2 years ago
Alternatives and similar repositories for UniRep-analysis
Users that are interested in UniRep-analysis are comparing it to the libraries listed below
Sorting:
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- ☆127Updated 4 years ago
- Paratope Prediction using Deep Learning☆60Updated 2 years ago
- Evolutionary velocity with protein language models☆93Updated last year
- Mutation effects predicted from sequence co-variation☆66Updated 7 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆58Updated 3 years ago
- ☆107Updated last year
- Modelling the Language of Life - Deep Learning Protein Sequences☆73Updated 4 years ago
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆61Updated 4 months ago
- Fully convolutional neural networks for protein residue-residue contact prediction☆43Updated 6 years ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 3 years ago
- Inference of couplings in proteins and RNAs from sequence variation☆111Updated 2 years ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆32Updated 7 months ago
- PSIPRED Protein Secondary Structure Predictor☆57Updated last month
- PaccMann models for protein language modeling☆42Updated 3 years ago
- Direct coupling analysis software for protein and RNA sequences☆51Updated 2 weeks ago
- A generative latent variable model for biological sequence families.☆230Updated 3 years ago
- Predict the structure of immune receptor proteins☆52Updated 8 months ago
- Code and Data for Generative modeling for AAV design☆10Updated last year
- Repository for publicly available deep learning models developed in Rosetta community☆117Updated 3 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆48Updated 11 months ago
- DeepContact Software☆26Updated 7 years ago
- A Python package for extracting protein sequence features☆59Updated 2 years ago
- Collecting AMP MIC data from different sources, then running a GAN to output promising sequences☆81Updated last year
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆55Updated 2 years ago
- Contact map alignment☆41Updated 4 years ago
- scripts and facilities for in-silico mutagenesis with FoldX☆57Updated 3 weeks ago
- Multi-task and masked language model-based protein sequence embedding models.☆102Updated 4 years ago
- Neural networks for deep mutational scanning data☆69Updated 2 months ago