churchlab / UniRep-analysisLinks
Analysis and figure code from Alley et al. 2019.
☆59Updated 2 years ago
Alternatives and similar repositories for UniRep-analysis
Users that are interested in UniRep-analysis are comparing it to the libraries listed below
Sorting:
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- Mutation effects predicted from sequence co-variation☆70Updated 8 years ago
- ☆127Updated 4 years ago
- Evolutionary velocity with protein language models☆95Updated last month
- Paratope Prediction using Deep Learning☆61Updated 2 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆71Updated last year
- Modelling the Language of Life - Deep Learning Protein Sequences☆75Updated 5 years ago
- ☆109Updated 2 years ago
- Fully convolutional neural networks for protein residue-residue contact prediction☆43Updated 6 years ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 3 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆60Updated 3 years ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆94Updated 2 years ago
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆57Updated 3 years ago
- Multi-task and masked language model-based protein sequence embedding models.☆104Updated 4 years ago
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆60Updated 10 months ago
- deep protein solubility prediction☆40Updated 6 years ago
- PaccMann models for protein language modeling☆43Updated 4 years ago
- ☆60Updated 3 years ago
- Neural networks for deep mutational scanning data☆72Updated 7 months ago
- Protein function prediction using a variational autoencoder☆94Updated 7 years ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆112Updated 2 years ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆34Updated 4 months ago
- A generative latent variable model for biological sequence families.☆246Updated 3 years ago
- Predict the structure of immune receptor proteins☆59Updated last year
- python tools for TCR:peptide-MHC modeling and analysis☆87Updated last year
- Unconstrained lattice antibody-antigen bindings generator☆111Updated 2 months ago
- A Python package for extracting protein sequence features☆62Updated 3 years ago
- Contact map alignment☆42Updated 4 years ago
- Collecting AMP MIC data from different sources, then running a GAN to output promising sequences☆86Updated last year
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆111Updated 4 months ago