Alternatives and similar repositories for UniRep-analysis

Users that are interested in UniRep-analysis are comparing it to the libraries listed below

• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆58Updated 4 years ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆65Updated 7 years ago
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆70Updated last year
• psipred / DMPfold
  De novo protein structure prediction using iteratively predicted structural constraints
  ☆57Updated 3 years ago
• KIT-MBS / pydca
  Direct coupling analysis software for protein and RNA sequences
  ☆50Updated 3 weeks ago
• sokrypton / GREMLIN_CPP
  GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!
  ☆54Updated 2 years ago
• psipred / DeepCov
  Fully convolutional neural networks for protein residue-residue contact prediction
  ☆44Updated 6 years ago
• aqlaboratory / rgn2
  ☆106Updated last year
• soedinglab / CCMpred
  Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
  ☆107Updated last year
• eliberis / parapred
  Paratope Prediction using Deep Learning
  ☆59Updated 2 years ago
• alexarnimueller / modlAMP
  Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.
  ☆60Updated 2 months ago
• fhalab / embeddings_reproduction
  ☆128Updated 4 years ago
• psipred / protein-vae
  Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies
  ☆87Updated last year
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆34Updated 3 years ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆90Updated last year
• sokrypton / map_align
  Contact map alignment
  ☆41Updated 4 years ago
• debbiemarkslab / plmc
  Inference of couplings in proteins and RNAs from sequence variation
  ☆108Updated 2 years ago
• RosettaCommons / trRosetta2
  Repository for publicly available deep learning models developed in Rosetta community
  ☆115Updated 3 years ago
• j3xugit / RaptorX-3DModeling
  Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…
  ☆100Updated 3 years ago
• csi-greifflab / Absolut
  Unconstrained lattice antibody-antigen bindings generator
  ☆109Updated 11 months ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆88Updated last year
• oxpig / AbLang
  AbLang: A language model for antibodies
  ☆140Updated last year
• PaccMann / paccmann_proteomics
  PaccMann models for protein language modeling
  ☆42Updated 3 years ago
• biomed-AI / GraphSite
  GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures
  ☆59Updated 10 months ago
• alexarnimueller / LSTM_peptides
  Long short-term memory recurrent neural networks for learning peptide and protein sequences to later design new, similar examples.
  ☆75Updated 2 years ago
• debbiemarkslab / SeqDesign
  Protein design and variant prediction using autoregressive generative models
  ☆103Updated last year
• ivanjayapurna / low-n-protein-engineering
  A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …
  ☆27Updated 4 years ago
• ElArkk / jax-unirep
  Reimplementation of the UniRep protein featurization model.
  ☆107Updated 9 months ago
• alex-hh / deep-protein-generation
  ☆58Updated 2 years ago
• fhalab / SPGen
  ☆19Updated 4 years ago