☆571Apr 3, 2025Updated 11 months ago
Alternatives and similar repositories for protein_bert
Users that are interested in protein_bert are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Implementation of ProteinBERT in Pytorch☆164Aug 10, 2021Updated 4 years ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,293May 22, 2025Updated 10 months ago
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,009Feb 7, 2024Updated 2 years ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆734Dec 11, 2022Updated 3 years ago
- Get protein embeddings from protein sequences☆508Apr 28, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Official release of the ProGen models☆694Aug 4, 2023Updated 2 years ago
- ☆256Jul 31, 2024Updated last year
- Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."☆305May 1, 2025Updated 10 months ago
- Deep functional residue identification☆349Mar 24, 2023Updated 3 years ago
- PaccMann models for protein language modeling☆43Nov 10, 2021Updated 4 years ago
- Ankh: Optimized Protein Language Model☆243Jun 16, 2025Updated 9 months ago
- Code for the ProteinMPNN paper☆1,677Aug 14, 2024Updated last year
- UniRep model, usage, and examples.☆361Mar 1, 2026Updated 3 weeks ago
- Protein sequence classification with self-supervised pretraining☆82Nov 29, 2021Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Official repository for the ProteinGym benchmarks☆405Updated this week
- Diffusion models of protein structure; trigonometry and attention are all you need!☆565Dec 12, 2023Updated 2 years ago
- [ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding☆151Mar 10, 2025Updated last year
- A collection of *fold* tools☆302Aug 8, 2025Updated 7 months ago
- Evolutionary couplings from protein and RNA sequence alignments☆299Oct 23, 2025Updated 5 months ago
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,196Mar 10, 2026Updated 2 weeks ago
- MMseqs2: ultra fast and sensitive search and clustering suite☆2,005Mar 9, 2026Updated 2 weeks ago
- ☆2,279Mar 19, 2026Updated last week
- Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2☆3,314Dec 16, 2025Updated 3 months ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Protein design and variant prediction using autoregressive generative models☆119Jan 23, 2024Updated 2 years ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆165Aug 24, 2023Updated 2 years ago
- Generative Models for Graph-Based Protein Design☆286Dec 24, 2020Updated 5 years ago
- Making Protein folding accessible to all!☆2,685Mar 17, 2026Updated last week
- Exploring Evolution-aware & free protein language models as protein function predictors☆63Sep 28, 2024Updated last year
- Making Protein Design accessible to all via Google Colab!☆895Mar 10, 2026Updated 2 weeks ago
- Prediction of protein substitution impact using a directional substitution matrix and homolog alignments☆12Oct 25, 2021Updated 4 years ago
- Bilingual Language Model for Protein Sequence and Structure☆306Mar 6, 2026Updated 3 weeks ago
- Pretrained METL models with minimal dependencies☆17Sep 18, 2025Updated 6 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Fast and accurate protein function prediction from sequence through pretrained language model and homology-based label diffusion☆45Jul 27, 2024Updated last year
- Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies☆410Sep 3, 2023Updated 2 years ago
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆737Jun 19, 2024Updated last year
- Protein Language Model☆123Jan 15, 2024Updated 2 years ago
- OmegaFold Release Code☆615Dec 12, 2022Updated 3 years ago
- Protein Graph Library☆1,167Mar 20, 2026Updated last week
- ☆26May 9, 2022Updated 3 years ago