ElArkk / jax-unirepLinks
Reimplementation of the UniRep protein featurization model.
☆107Updated 11 months ago
Alternatives and similar repositories for jax-unirep
Users that are interested in jax-unirep are comparing it to the libraries listed below
Sorting:
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆88Updated 2 years ago
- Fitness landscape exploration sandbox for biological sequence design.☆165Updated 2 years ago
- ☆127Updated 4 years ago
- Evolutionary couplings from protein and RNA sequence alignments☆275Updated 5 months ago
- PyTorch library of layers acting on protein representations☆119Updated last year
- Analysis and figure code from Alley et al. 2019.☆58Updated 2 years ago
- A generative latent variable model for biological sequence families.☆233Updated 3 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆60Updated 3 years ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆110Updated last year
- Modelling the Language of Life - Deep Learning Protein Sequences☆73Updated 4 years ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆129Updated 3 years ago
- Unconstrained lattice antibody-antigen bindings generator☆110Updated last year
- ☆36Updated 6 years ago
- trRosetta for protein design☆182Updated 4 years ago
- Paratope Prediction using Deep Learning☆60Updated 2 years ago
- Protein function prediction using a variational autoencoder☆94Updated 7 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated last year
- AbLang: A language model for antibodies☆146Updated last year
- ☆110Updated 3 years ago
- Evolutionary velocity with protein language models☆94Updated last year
- ☆107Updated last year
- Protein design and variant prediction using autoregressive generative models☆109Updated last year
- ☆58Updated 2 years ago
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆100Updated 3 years ago
- A Python package for extracting protein sequence features☆59Updated 3 years ago
- Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…☆34Updated 3 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- Inference of couplings in proteins and RNAs from sequence variation☆112Updated 2 years ago
- ☆20Updated 4 years ago
- PDNET: A fully open-source framework for deep learning protein real-valued distances☆36Updated 4 years ago