Alternatives and similar repositories for jax-unirep

Users that are interested in jax-unirep are comparing it to the libraries listed below

• debbiemarkslab / EVcouplings
  Evolutionary couplings from protein and RNA sequence alignments
  ☆267Updated 3 months ago
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆125Updated 3 years ago
• debbiemarkslab / DeepSequence
  A generative latent variable model for biological sequence families.
  ☆219Updated 3 years ago
• psipred / protein-vae
  Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies
  ☆87Updated last year
• churchlab / UniRep-analysis
  Analysis and figure code from Alley et al. 2019.
  ☆59Updated 2 years ago
• soedinglab / CCMpred
  Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
  ☆107Updated last year
• fhalab / embeddings_reproduction
  ☆128Updated 4 years ago
• debbiemarkslab / plmc
  Inference of couplings in proteins and RNAs from sequence variation
  ☆108Updated 2 years ago
• gjoni / trDesign
  trRosetta for protein design
  ☆179Updated 4 years ago
• csi-greifflab / Absolut
  Unconstrained lattice antibody-antigen bindings generator
  ☆109Updated 11 months ago
• oxpig / AbLang
  AbLang: A language model for antibodies
  ☆140Updated last year
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆203Updated last year
• debbiemarkslab / SeqDesign
  Protein design and variant prediction using autoregressive generative models
  ☆103Updated last year
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆139Updated 4 months ago
• samsinai / FLEXS
  Fitness landscape exploration sandbox for biological sequence design.
  ☆163Updated 2 years ago
• alex-hh / deep-protein-generation
  ☆58Updated 2 years ago
• churchlab / UniRep
  UniRep model, usage, and examples.
  ☆351Updated 2 years ago
• MachineLearningLifeScience / meaningful-protein-representations
  ☆109Updated 3 years ago
• mheinzinger / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆72Updated 4 years ago
• microsoft / protein-sequence-models
  ☆247Updated 10 months ago
• psipred / DMPfold
  De novo protein structure prediction using iteratively predicted structural constraints
  ☆57Updated 3 years ago
• martinez-zacharya / TRILL
  Sandbox for Deep-Learning based Computational Protein Design
  ☆112Updated 2 weeks ago
• steineggerlab / foldcomp
  Compressing protein structures effectively with torsion angles
  ☆173Updated last month
• RosettaCommons / trRosetta2
  Repository for publicly available deep learning models developed in Rosetta community
  ☆115Updated 3 years ago
• lamoureux-lab / TorchProteinLibrary
  PyTorch library of layers acting on protein representations
  ☆118Updated 11 months ago
• oxpig / ANARCI
  Antibody Numbering and Antigen Receptor ClassIfication
  ☆214Updated last year
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆112Updated last year
• Rostlab / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆120Updated 4 years ago
• Merck / BioPhi
  BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…
  ☆188Updated 3 weeks ago
• sokrypton / GREMLIN_CPP
  GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!
  ☆54Updated 2 years ago