Mutation effects predicted from sequence co-variation
☆75Sep 3, 2017Updated 8 years ago
Alternatives and similar repositories for EVmutation
Users that are interested in EVmutation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Evolutionary couplings from protein and RNA sequence alignments☆315Apr 20, 2026Updated 4 months ago
- Inference of couplings in proteins and RNAs from sequence variation☆128Jan 21, 2023Updated 3 years ago
- A generative latent variable model for biological sequence families.☆256Mar 15, 2022Updated 4 years ago
- Visually explore covariation in protein families☆41Dec 8, 2019Updated 6 years ago
- Variational Bayes for discrete undirected models☆11Aug 7, 2017Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- UniRep model, usage, and examples.☆367Mar 1, 2026Updated 5 months ago
- A package for making MuE observation models in Edward2.☆13Jun 10, 2021Updated 5 years ago
- ☆82Oct 27, 2021Updated 4 years ago
- An evolutionary context-integrated deep learning framework for protein engineering☆71Jun 1, 2022Updated 4 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆207Mar 16, 2024Updated 2 years ago
- Improved contact predictions using the recognition of protein like contact patterns.☆14May 18, 2018Updated 8 years ago
- Direct coupling analysis software for protein and RNA sequences☆61Jul 21, 2025Updated last year
- ☆20Jul 16, 2021Updated 5 years ago
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆19Feb 8, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆22Jun 10, 2024Updated 2 years ago
- Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…☆28Aug 9, 2023Updated 3 years ago
- Visual Convolutional Neural Graph Fingerprints in Theano/Lasagne☆35Sep 23, 2016Updated 9 years ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Aug 23, 2020Updated 6 years ago
- ☆11Apr 25, 2021Updated 5 years ago
- Code for the paper "Learning to engineer protein flexibility".☆22Mar 24, 2026Updated 5 months ago
- ☆16May 10, 2022Updated 4 years ago
- Analysis and figure code from Alley et al. 2019.☆60Mar 25, 2023Updated 3 years ago
- Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape☆10Jun 11, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Deep learning based prediction of pi-helices in protein sequences☆11Mar 24, 2023Updated 3 years ago
- Graphical Representation of Ancestral Sequence Predictions☆14Mar 6, 2023Updated 3 years ago
- Contact map alignment☆16May 10, 2018Updated 8 years ago
- A Python API for managing genotype-phenotype map data☆12Aug 18, 2023Updated 3 years ago
- ☆13Jul 14, 2023Updated 3 years ago
- ☆30May 24, 2024Updated 2 years ago
- CLEAN: a contrastive learning model for high-quality functional prediction of proteins☆326Apr 6, 2025Updated last year
- ☆13Sep 25, 2022Updated 3 years ago
- PyPEF – Pythonic Protein Engineering Framework☆26Sep 20, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Contact map alignment☆44Feb 3, 2021Updated 5 years ago
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- Enzyme kinetics data extraction pipeline☆17Jul 17, 2026Updated last month
- SPROUT is a machine learning tool to predict the DNA repair outcome in CRISPR experiments.☆16Jul 17, 2021Updated 5 years ago
- Differentiable Pairing using Alignment-based Language Models☆27Jan 5, 2024Updated 2 years ago
- Listing of papers about machine learning for proteins.☆1,715May 31, 2024Updated 2 years ago
- Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023…☆23Aug 8, 2024Updated 2 years ago