debbiemarkslab / EVmutationLinks
Mutation effects predicted from sequence co-variation
☆72Updated 8 years ago
Alternatives and similar repositories for EVmutation
Users that are interested in EVmutation are comparing it to the libraries listed below
Sorting:
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- Inference of couplings in proteins and RNAs from sequence variation☆116Updated 3 years ago
- Evolutionary velocity with protein language models☆95Updated last month
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆63Updated 10 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- Direct coupling analysis software for protein and RNA sequences☆58Updated 6 months ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 3 years ago
- Fast protein structure searching or your money back☆118Updated 3 weeks ago
- Evolutionary conservation estimation of residues or nucleotides☆57Updated 3 years ago
- scripts and facilities for in-silico mutagenesis with FoldX☆65Updated last month
- Contact map alignment☆42Updated 5 years ago
- Automatic oligonucleotide design for PCR-based gene synthesis☆51Updated 2 months ago
- DSSPparser is an easy tool to parse dssp file, and can transform PDB format file to dssp format file by xssp,also support the tansfrom be…☆13Updated 3 years ago
- Detection of remote homology by comparison of protein language model representations☆61Updated last year
- Deciphering protein evolution and fitness landscapes with latent space models☆37Updated 4 years ago
- Analysis and figure code from Alley et al. 2019.☆59Updated 2 years ago
- A domain parser for Alphafold models☆46Updated 2 years ago
- Transmembrane proteins predicted through Language Model embeddings☆44Updated 6 months ago
- RaptorX-Property: a Standalone Package for Protein Structure Property Prediction☆19Updated 6 years ago
- GraphPart, a data partitioning method for ML on biological sequences☆33Updated 2 years ago
- ☆86Updated 2 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- ☆47Updated last year
- Geometric deep learning of protein–DNA binding specificity☆76Updated 10 months ago
- Feature map and function annotation of Proteins☆34Updated last year
- python tools for TCR:peptide-MHC modeling and analysis☆88Updated last year
- PSIPRED Protein Secondary Structure Predictor☆58Updated 7 months ago
- ☆76Updated last year
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆60Updated 10 months ago
- ☆25Updated 2 years ago