debbiemarkslab / EVmutationLinks
Mutation effects predicted from sequence co-variation
☆65Updated 7 years ago
Alternatives and similar repositories for EVmutation
Users that are interested in EVmutation are comparing it to the libraries listed below
Sorting:
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆58Updated 4 years ago
- Evolutionary velocity with protein language models☆90Updated last year
- Inference of couplings in proteins and RNAs from sequence variation☆108Updated 2 years ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 3 years ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆54Updated 2 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆88Updated last year
- A domain parser for Alphafold models☆38Updated last year
- RaptorX-Property: a Standalone Package for Protein Structure Property Prediction☆17Updated 6 years ago
- Direct coupling analysis software for protein and RNA sequences☆50Updated 2 weeks ago
- ☆39Updated 8 months ago
- ☆49Updated 2 months ago
- Contact map alignment☆41Updated 4 years ago
- ☆68Updated 8 months ago
- ☆19Updated 4 years ago
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆60Updated 2 months ago
- Detection of remote homology by comparison of protein language model representations☆53Updated 5 months ago
- Deciphering protein evolution and fitness landscapes with latent space models☆32Updated 3 years ago
- scripts and facilities for in-silico mutagenesis with FoldX☆56Updated 5 months ago
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆94Updated last month
- Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.☆14Updated 4 months ago
- ☆64Updated 7 months ago
- ☆62Updated 3 years ago
- ☆25Updated last year
- PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.☆23Updated last year
- ☆30Updated last year
- ☆37Updated 4 months ago
- Unconstrained lattice antibody-antigen bindings generator☆109Updated 11 months ago
- ☆20Updated 2 years ago
- GTalign, HPC protein structure alignment, superposition and search (alpha release)☆45Updated 4 months ago
- Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…☆47Updated last month