debbiemarkslab / EVmutationLinks
Mutation effects predicted from sequence co-variation
☆70Updated 8 years ago
Alternatives and similar repositories for EVmutation
Users that are interested in EVmutation are comparing it to the libraries listed below
Sorting:
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆61Updated 9 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- Evolutionary velocity with protein language models☆95Updated last month
- Inference of couplings in proteins and RNAs from sequence variation☆115Updated 2 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- Direct coupling analysis software for protein and RNA sequences☆56Updated 5 months ago
- Deciphering protein evolution and fitness landscapes with latent space models☆36Updated 4 years ago
- scripts and facilities for in-silico mutagenesis with FoldX☆65Updated last week
- Evolutionary conservation estimation of residues or nucleotides☆57Updated 3 years ago
- Detection of remote homology by comparison of protein language model representations☆61Updated last year
- Contact map alignment☆41Updated 4 years ago
- ☆47Updated last year
- RaptorX-Property: a Standalone Package for Protein Structure Property Prediction☆19Updated 6 years ago
- Automatic oligonucleotide design for PCR-based gene synthesis☆50Updated last month
- A domain parser for Alphafold models☆46Updated 2 years ago
- Transmembrane proteins predicted through Language Model embeddings☆44Updated 5 months ago
- Feature map and function annotation of Proteins☆34Updated last year
- GraphPart, a data partitioning method for ML on biological sequences☆33Updated 2 years ago
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆77Updated 4 months ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 3 years ago
- Fast protein structure searching or your money back☆118Updated 3 months ago
- PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.☆23Updated 2 years ago
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆109Updated last month
- ☆77Updated last year
- ☆38Updated 6 months ago
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆111Updated 4 months ago
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆77Updated 4 months ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆39Updated 4 months ago
- Singularity recipe for AlphaFold☆37Updated last year
- ☆32Updated last year