Alternatives and similar repositories for tape

Users that are interested in tape are comparing it to the libraries listed below

• agemagician / ProtTrans
  ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…
  ☆1,243Updated 3 months ago
• sacdallago / bio_embeddings
  Get protein embeddings from protein sequences
  ☆495Updated 2 years ago
• nadavbra / protein_bert
  ☆545Updated 4 months ago
• churchlab / UniRep
  UniRep model, usage, and examples.
  ☆355Updated 3 years ago
• LPDI-EPFL / masif
  MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
  ☆679Updated last year
• yangkky / Machine-learning-for-proteins
  Listing of papers about machine learning for proteins.
  ☆1,650Updated last year
• salesforce / provis
  Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."
  ☆301Updated 3 months ago
• sokrypton / ColabDesign
  Making Protein Design accessible to all via Google Colab!
  ☆778Updated this week
• tbepler / protein-sequence-embedding-iclr2019
  Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019
  ☆261Updated 4 years ago
• HannesStark / EquiBind
  EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein
  ☆513Updated 6 months ago
• microsoft / foldingdiff
  Diffusion models of protein structure; trigonometry and attention are all you need!
  ☆552Updated last year
• kexinhuang12345 / DeepPurpose
  A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
  ☆1,076Updated last year
• gcorso / DiffDock
  Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
  ☆1,307Updated 3 months ago
• molecularsets / moses
  Molecular Sets (MOSES): A Benchmarking Platform for Molecular Generation Models
  ☆917Updated last year
• Graylab / IgFold
  Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
  ☆371Updated last year
• jonathanking / sidechainnet
  An all-atom protein structure dataset for machine learning.
  ☆355Updated last year
• Urinx / alphafold_pytorch
  An implementation of the DeepMind's AlphaFold based on PyTorch for research
  ☆397Updated 4 years ago
• soedinglab / hh-suite
  Remote protein homology detection suite.
  ☆587Updated 2 weeks ago
• dauparas / ProteinMPNN
  Code for the ProteinMPNN paper
  ☆1,421Updated last year
• RosettaCommons / PyRosetta.notebooks
  Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
  ☆600Updated last year
• microsoft / protein-sequence-models
  ☆252Updated last year
• flatironinstitute / DeepFRI
  Deep functional residue identification
  ☆330Updated 2 years ago
• biolists / folding_tools
  A collection of *fold* tools
  ☆297Updated 3 weeks ago
• DSPsleeporg / smiles-transformer
  Original implementation of the paper "SMILES Transformer: Pre-trained Molecular Fingerprint for Low Data Drug Discovery" by Shion Honda e…
  ☆343Updated 2 years ago
• OATML-Markslab / ProteinGym
  Official repository for the ProteinGym benchmarks
  ☆345Updated last month
• salesforce / progen
  Official release of the ProGen models
  ☆668Updated 2 years ago
• seyonechithrananda / bert-loves-chemistry
  bert-loves-chemistry: a repository of HuggingFace models applied on chemical SMILES data for drug design, chemical modelling, etc.
  ☆467Updated 10 months ago
• westlake-repl / SaProt
  Saprot: Protein Language Model with Structural Alphabet (AA+3Di)
  ☆493Updated last week
• jingraham / neurips19-graph-protein-design
  Generative Models for Graph-Based Protein Design
  ☆280Updated 4 years ago
• martinpacesa / BindCraft
  User friendly and accurate binder design pipeline
  ☆640Updated 2 weeks ago