Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
☆746Dec 11, 2022Updated 3 years ago
Alternatives and similar repositories for tape
Users that are interested in tape are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,323May 22, 2025Updated last year
- UniRep model, usage, and examples.☆367Mar 1, 2026Updated 8 months ago
- Listing of papers about machine learning for proteins.☆1,719May 31, 2024Updated 2 years ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆121Aug 7, 2021Updated 5 years ago
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,176Feb 7, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Get protein embeddings from protein sequences☆512Apr 28, 2023Updated 3 years ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆144Apr 23, 2026Updated 6 months ago
- Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."☆305May 1, 2025Updated last year
- Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019☆262Jun 16, 2021Updated 5 years ago
- ☆261Jul 31, 2024Updated 2 years ago
- Generative Models for Graph-Based Protein Design☆292Dec 24, 2020Updated 5 years ago
- ☆585Apr 7, 2026Updated 6 months ago
- A package to predict protein inter-residue geometries from sequence data☆221Sep 27, 2021Updated 5 years ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆170Aug 24, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- PaccMann models for protein language modeling☆44Nov 10, 2021Updated 4 years ago
- Standardized data set for machine learning of protein structure☆920Nov 18, 2020Updated 5 years ago
- Official repository for the ProteinGym benchmarks☆485Mar 25, 2026Updated 7 months ago
- A generative latent variable model for biological sequence families.☆258Mar 15, 2022Updated 4 years ago
- GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)☆331Jun 13, 2025Updated last year
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆788Jun 19, 2024Updated 2 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆122Sep 15, 2020Updated 6 years ago
- OmegaFold Release Code☆629Dec 12, 2022Updated 3 years ago
- Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2☆3,452Dec 16, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure☆329Nov 15, 2025Updated 11 months ago
- Deep functional residue identification☆355Mar 24, 2023Updated 3 years ago
- ☆110Mar 7, 2022Updated 4 years ago
- List of papers about Proteins Design using Deep Learning☆1,983Aug 15, 2026Updated 2 months ago
- Official release of the ProGen models☆708Jun 2, 2026Updated 5 months ago
- Code for the ProteinMPNN paper☆1,901Aug 14, 2024Updated 2 years ago
- Protein Graph Library☆1,201Updated this week
- Predicting protein structure through sequence modeling☆112May 4, 2020Updated 6 years ago
- Fitness landscape exploration sandbox for biological sequence design.☆177Feb 16, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Evolutionary couplings from protein and RNA sequence alignments☆315Apr 20, 2026Updated 6 months ago
- Making Protein Design accessible to all via Google Colab!☆947Oct 14, 2026Updated 3 weeks ago
- An all-atom protein structure dataset for machine learning.☆365Mar 16, 2024Updated 2 years ago
- [ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding☆153Mar 10, 2025Updated last year
- A collection of *fold* tools☆303Aug 8, 2025Updated last year
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆646Mar 8, 2026Updated 7 months ago
- Protein hallucination and inpainting with RoseTTAFold☆284Mar 30, 2023Updated 3 years ago