Alternatives and similar repositories for tape

Users that are interested in tape are comparing it to the libraries listed below

• agemagician / ProtTrans
  ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…
  ☆1,276Updated 6 months ago
• sacdallago / bio_embeddings
  Get protein embeddings from protein sequences
  ☆505Updated 2 years ago
• nadavbra / protein_bert
  ☆563Updated 8 months ago
• churchlab / UniRep
  UniRep model, usage, and examples.
  ☆358Updated 3 years ago
• LPDI-EPFL / masif
  MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
  ☆705Updated last year
• tbepler / protein-sequence-embedding-iclr2019
  Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019
  ☆261Updated 4 years ago
• sokrypton / ColabDesign
  Making Protein Design accessible to all via Google Colab!
  ☆848Updated last month
• yangkky / Machine-learning-for-proteins
  Listing of papers about machine learning for proteins.
  ☆1,681Updated last year
• salesforce / provis
  Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."
  ☆303Updated 7 months ago
• microsoft / foldingdiff
  Diffusion models of protein structure; trigonometry and attention are all you need!
  ☆560Updated last year
• HannesStark / EquiBind
  EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein
  ☆528Updated 9 months ago
• Graylab / IgFold
  Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
  ☆391Updated 2 years ago
• soedinglab / hh-suite
  Remote protein homology detection suite.
  ☆602Updated 3 months ago
• flatironinstitute / DeepFRI
  Deep functional residue identification
  ☆339Updated 2 years ago
• Urinx / alphafold_pytorch
  An implementation of the DeepMind's AlphaFold based on PyTorch for research
  ☆401Updated 4 years ago
• OATML-Markslab / ProteinGym
  Official repository for the ProteinGym benchmarks
  ☆366Updated 4 months ago
• microsoft / protein-sequence-models
  ☆253Updated last year
• dauparas / ProteinMPNN
  Code for the ProteinMPNN paper
  ☆1,531Updated last year
• biolists / folding_tools
  A collection of *fold* tools
  ☆300Updated 4 months ago
• gcorso / DiffDock
  Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
  ☆1,386Updated 7 months ago
• RosettaCommons / PyRosetta.notebooks
  Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
  ☆633Updated last year
• kexinhuang12345 / DeepPurpose
  A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
  ☆1,100Updated last year
• jonathanking / sidechainnet
  An all-atom protein structure dataset for machine learning.
  ☆356Updated last year
• a-r-j / graphein
  Protein Graph Library
  ☆1,145Updated last month
• steineggerlab / foldseek
  Foldseek enables fast and sensitive comparisons of large structure sets.
  ☆1,117Updated 2 weeks ago
• RosettaCommons / RFDesign
  Protein hallucination and inpainting with RoseTTAFold
  ☆274Updated 2 years ago
• jingraham / neurips19-graph-protein-design
  Generative Models for Graph-Based Protein Design
  ☆282Updated 4 years ago
• uw-ipd / RoseTTAFold2NA
  RoseTTAFold2 protein/nucleic acid complex prediction
  ☆369Updated last year
• YoshitakaMo / localcolabfold
  ColabFold on your local PC
  ☆787Updated 5 months ago
• ml4bio / RNA-FM
  Nature Methods: RNA foundation model (together with RhoFold)
  ☆327Updated 6 months ago