Alternatives and similar repositories for trDesign

Users that are interested in trDesign are comparing it to the libraries listed below

• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆129Updated 3 years ago
• oxpig / AbLang
  AbLang: A language model for antibodies
  ☆148Updated 2 years ago
• RosettaCommons / RFDesign
  Protein hallucination and inpainting with RoseTTAFold
  ☆268Updated 2 years ago
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆120Updated 2 years ago
• Graylab / IgLM
  Generative Language Modeling for Antibody Design
  ☆165Updated last year
• RosettaCommons / trRosetta2
  Repository for publicly available deep learning models developed in Rosetta community
  ☆119Updated 4 years ago
• RosettaCommons / DeepAb
  Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.
  ☆164Updated 2 years ago
• Merck / BioPhi
  BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…
  ☆204Updated 4 months ago
• FreshAirTonight / af2complex
  Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
  ☆164Updated last year
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆161Updated 8 months ago
• rifdock / rifdock
  Rifdock Library for Conformational Search
  ☆162Updated last year
• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆148Updated 5 months ago
• gjoni / trRosetta
  A package to predict protein inter-residue geometries from sequence data
  ☆217Updated 4 years ago
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆215Updated 2 years ago
• uw-ipd / RoseTTAFold2
  ☆198Updated 5 months ago
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆163Updated last year
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆139Updated last month
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆106Updated 4 months ago
• patrickbryant1 / Umol
  Protein-ligand structure prediction
  ☆228Updated 2 months ago
• gersteinlab / ThermoNet
  ThermoNet is a computational method for quantitative prediction of the impact of single-point mutations on protein thermodynamic stabilit…
  ☆118Updated last year
• jertubiana / ScanNet
  ☆133Updated 3 months ago
• wallnerlab / DockQ
  DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models
  ☆328Updated 2 months ago
• soedinglab / CCMpred
  Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
  ☆110Updated last year
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆196Updated 2 months ago
• j3xugit / RaptorX-3DModeling
  Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…
  ☆98Updated 3 years ago
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆107Updated last year
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆162Updated 2 months ago
• varun-shanker / structural-evolution
  ☆115Updated last year
• Kortemme-Lab / flex_ddG_tutorial
  ☆126Updated 3 years ago
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆159Updated 3 weeks ago