Alternatives and similar repositories for trDesign

Users that are interested in trDesign are comparing it to the libraries listed below

• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆132Updated 4 years ago
• RosettaCommons / trRosetta2
  Repository for publicly available deep learning models developed in Rosetta community
  ☆122Updated 4 years ago
• oxpig / AbLang
  AbLang: A language model for antibodies
  ☆156Updated 2 years ago
• RosettaCommons / RFDesign
  Protein hallucination and inpainting with RoseTTAFold
  ☆276Updated 2 years ago
• gjoni / trRosetta
  A package to predict protein inter-residue geometries from sequence data
  ☆220Updated 4 years ago
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆129Updated 2 years ago
• RosettaCommons / DeepAb
  Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.
  ☆167Updated 3 years ago
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆168Updated 2 years ago
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆218Updated 2 years ago
• FreshAirTonight / af2complex
  Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
  ☆168Updated last year
• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆151Updated 8 months ago
• uw-ipd / RoseTTAFold2
  ☆207Updated 9 months ago
• Graylab / IgLM
  Generative Language Modeling for Antibody Design
  ☆179Updated last year
• rifdock / rifdock
  Rifdock Library for Conformational Search
  ☆167Updated last year
• patrickbryant1 / Umol
  Protein-ligand structure prediction
  ☆237Updated 5 months ago
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆169Updated 2 months ago
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆152Updated last month
• aqlaboratory / rgn2
  ☆109Updated 2 years ago
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆110Updated last year
• jertubiana / ScanNet
  ☆137Updated 7 months ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 3 years ago
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆171Updated 3 months ago
• Merck / BioPhi
  BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…
  ☆225Updated 8 months ago
• haddocking / prodigy
  Predict the binding affinity of protein-protein complexes from structural data
  ☆169Updated 3 months ago
• soedinglab / CCMpred
  Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
  ☆112Updated 2 years ago
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆113Updated 8 months ago
• wallnerlab / DockQ
  DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models
  ☆355Updated 2 months ago
• steineggerlab / foldcomp
  Compressing protein structures effectively with torsion angles
  ☆186Updated last month
• Kortemme-Lab / flex_ddG_tutorial
  ☆139Updated 3 years ago
• ikalvet / heme_binder_diffusion
  ☆146Updated 6 months ago