Alternatives and similar repositories for trDesign

Users that are interested in trDesign are comparing it to the libraries listed below

• RosettaCommons / RFDesign
  Protein hallucination and inpainting with RoseTTAFold
  ☆258Updated 2 years ago
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆199Updated last year
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆124Updated 3 years ago
• steineggerlab / foldcomp
  Compressing protein structures effectively with torsion angles
  ☆172Updated 3 weeks ago
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆111Updated last year
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆155Updated 2 months ago
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆150Updated last year
• RosettaCommons / DeepAb
  Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.
  ☆159Updated 2 years ago
• oxpig / AbLang
  AbLang: A language model for antibodies
  ☆138Updated last year
• RosettaCommons / protein_generator
  Joint sequence and structure generation with RoseTTAFold sequence space diffusion
  ☆311Updated 6 months ago
• patrickbryant1 / Umol
  Protein-ligand structure prediction
  ☆214Updated 9 months ago
• FreshAirTonight / af2complex
  Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
  ☆161Updated 8 months ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 2 years ago
• bjornwallner / DockQ
  DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models
  ☆277Updated 3 months ago
• ikalvet / heme_binder_diffusion
  ☆124Updated 7 months ago
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆133Updated 3 months ago
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆152Updated last year
• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆140Updated 2 weeks ago
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆98Updated 7 months ago
• j3xugit / RaptorX-3DModeling
  Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…
  ☆100Updated 3 years ago
• jertubiana / ScanNet
  ☆125Updated last year
• rdk / p2rank
  P2Rank: Protein-ligand binding site prediction from protein structure based on machine learning.
  ☆319Updated last month
• Kortemme-Lab / flex_ddG_tutorial
  ☆110Updated 2 years ago
• haddocking / prodigy
  Predict the binding affinity of protein-protein complexes from structural data
  ☆131Updated last month
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆167Updated 3 months ago
• varun-shanker / structural-evolution
  ☆105Updated 10 months ago
• uw-ipd / RoseTTAFold2
  ☆191Updated 3 weeks ago
• RosettaCommons / trRosetta2
  Repository for publicly available deep learning models developed in Rosetta community
  ☆114Updated 3 years ago
• Graylab / IgLM
  Generative Language Modeling for Antibody Design
  ☆149Updated 7 months ago
• rifdock / rifdock
  Rifdock Library for Conformational Search
  ☆156Updated 11 months ago