Alternatives and similar repositories for SeqVec

Users that are interested in SeqVec are comparing it to the libraries listed below

• mheinzinger / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆75Updated 4 years ago
• tbepler / prose
  Multi-task and masked language model-based protein sequence embedding models.
  ☆104Updated 4 years ago
• fhalab / embeddings_reproduction
  ☆127Updated 4 years ago
• flatironinstitute / DeepFRI
  Deep functional residue identification
  ☆339Updated 2 years ago
• MachineLearningLifeScience / meaningful-protein-representations
  ☆110Updated 3 years ago
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆217Updated 2 years ago
• Biomatter-Designs / ProteinGAN
  ☆190Updated 3 years ago
• aqlaboratory / rgn2
  ☆108Updated 2 years ago
• debbiemarkslab / DeepSequence
  A generative latent variable model for biological sequence families.
  ☆242Updated 3 years ago
• soedinglab / CCMpred
  Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
  ☆110Updated 2 years ago
• nstrodt / UDSMProt
  Protein sequence classification with self-supervised pretraining
  ☆82Updated 4 years ago
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆129Updated 4 years ago
• tadorfer / protlearn
  A Python package for extracting protein sequence features
  ☆62Updated 3 years ago
• samsledje / D-SCRIPT
  A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions
  ☆106Updated this week
• gjoni / trDesign
  trRosetta for protein design
  ☆183Updated 4 years ago
• HannesStark / protein-localization
  Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…
  ☆75Updated 2 years ago
• twopin / CAMP
  predicting peptide-protein interactions
  ☆136Updated last year
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆61Updated 2 years ago
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆109Updated 6 months ago
• mheinzinger / ProstT5
  Bilingual Language Model for Protein Sequence and Structure
  ☆280Updated 11 months ago
• Merck / BioPhi
  BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…
  ☆212Updated 6 months ago
• zswitten / Antimicrobial-Peptides
  Collecting AMP MIC data from different sources, then running a GAN to output promising sequences
  ☆86Updated last year
• DeepChainBio / bio-transformers
  bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.
  ☆155Updated 2 years ago
• oxpig / AbLang
  AbLang: A language model for antibodies
  ☆151Updated 2 years ago
• PaccMann / paccmann_proteomics
  PaccMann models for protein language modeling
  ☆43Updated 4 years ago
• RosettaCommons / trRosetta2
  Repository for publicly available deep learning models developed in Rosetta community
  ☆120Updated 4 years ago
• churchlab / UniRep-analysis
  Analysis and figure code from Alley et al. 2019.
  ☆59Updated 2 years ago
• Superzchen / iFeature
  iFeature is a comprehensive Python-based toolkit for generating various numerical feature representation schemes from protein or peptide …
  ☆193Updated 3 years ago
• microsoft / protein-sequence-models
  ☆253Updated last year
• oxpig / ANARCI
  Antibody Numbering and Antigen Receptor ClassIfication
  ☆250Updated last year