Alternatives and similar repositories for SeqVec

Users that are interested in SeqVec are comparing it to the libraries listed below

• mheinzinger / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆73Updated 4 years ago
• tbepler / prose
  Multi-task and masked language model-based protein sequence embedding models.
  ☆102Updated 4 years ago
• fhalab / embeddings_reproduction
  ☆127Updated 4 years ago
• aqlaboratory / rgn2
  ☆107Updated last year
• flatironinstitute / DeepFRI
  Deep functional residue identification
  ☆329Updated 2 years ago
• debbiemarkslab / DeepSequence
  A generative latent variable model for biological sequence families.
  ☆230Updated 3 years ago
• MachineLearningLifeScience / meaningful-protein-representations
  ☆111Updated 3 years ago
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆211Updated last year
• soedinglab / CCMpred
  Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
  ☆109Updated last year
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆128Updated 3 years ago
• nstrodt / UDSMProt
  Protein sequence classification with self-supervised pretraining
  ☆82Updated 3 years ago
• gjoni / trDesign
  trRosetta for protein design
  ☆182Updated 4 years ago
• Biomatter-Designs / ProteinGAN
  ☆192Updated 3 years ago
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆102Updated 2 months ago
• oxpig / AbLang
  AbLang: A language model for antibodies
  ☆144Updated last year
• tadorfer / protlearn
  A Python package for extracting protein sequence features
  ☆59Updated 2 years ago
• Merck / BioPhi
  BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…
  ☆198Updated 2 months ago
• mheinzinger / ProstT5
  Bilingual Language Model for Protein Sequence and Structure
  ☆262Updated 7 months ago
• debbiemarkslab / EVcouplings
  Evolutionary couplings from protein and RNA sequence alignments
  ☆274Updated 5 months ago
• RosettaCommons / DeepAb
  Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.
  ☆161Updated 2 years ago
• gersteinlab / ThermoNet
  ThermoNet is a computational method for quantitative prediction of the impact of single-point mutations on protein thermodynamic stabilit…
  ☆117Updated last year
• RosettaCommons / trRosetta2
  Repository for publicly available deep learning models developed in Rosetta community
  ☆117Updated 3 years ago
• varun-shanker / structural-evolution
  ☆112Updated last year
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆60Updated 2 years ago
• churchlab / UniRep-analysis
  Analysis and figure code from Alley et al. 2019.
  ☆60Updated 2 years ago
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆155Updated last year
• oxpig / ANARCI
  Antibody Numbering and Antigen Receptor ClassIfication
  ☆228Updated last year
• samsledje / D-SCRIPT
  A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions
  ☆100Updated 2 weeks ago
• twopin / CAMP
  predicting peptide-protein interactions
  ☆132Updated last year
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆115Updated last year