Modelling the Language of Life - Deep Learning Protein Sequences
☆123Sep 15, 2020Updated 5 years ago
Alternatives and similar repositories for SeqVec
Users that are interested in SeqVec are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Modelling the Language of Life - Deep Learning Protein Sequences☆76Dec 28, 2020Updated 5 years ago
- Get protein embeddings from protein sequences☆509Apr 28, 2023Updated 3 years ago
- Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019☆262Jun 16, 2021Updated 5 years ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,323May 22, 2025Updated last year
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆744Dec 11, 2022Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- UniRep model, usage, and examples.☆367Mar 1, 2026Updated 6 months ago
- ☆22May 31, 2023Updated 3 years ago
- Protein sequence classification with self-supervised pretraining☆82Nov 29, 2021Updated 4 years ago
- Improving protein function prediction with synthetic feature samples created by generative adversarial networks☆22Oct 6, 2020Updated 5 years ago
- AntiRef: reference clusters of human antibody sequences☆12Apr 18, 2024Updated 2 years ago
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆80Sep 6, 2023Updated 2 years ago
- Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."☆305May 1, 2025Updated last year
- Fast and accurate protein structure prediction☆58Jan 17, 2025Updated last year
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,170Feb 7, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Transformer for protein function prediction (version 2)☆14Updated this week
- Unsupervised neural network for learning embeddings of GO terms.☆21Feb 19, 2022Updated 4 years ago
- An official implementation of Protein Representation Learning via Knowledge Enhanced Primary Structure Reasoning☆28Jul 14, 2023Updated 3 years ago
- Deep learning prediction of protein residue-residue distances☆23Jun 28, 2022Updated 4 years ago
- NLP for Proteins - A paper collection☆13Sep 10, 2020Updated 5 years ago
- Analysis and figure code from Alley et al. 2019.☆60Mar 25, 2023Updated 3 years ago
- Deep Generative Models for Drug Combination (Graph Set) Generation given Hierarchical Disease Network Embedding☆31Mar 25, 2023Updated 3 years ago
- ☆51Dec 2, 2024Updated last year
- Multi-Channel Deep Chemogenomic Modeling of Receptor-Ligand Binding Affinity Prediction for Drug Discovery☆28May 16, 2021Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Deep convolutional neural networks for protein contact map prediction☆23Aug 5, 2019Updated 7 years ago
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Apr 2, 2023Updated 3 years ago
- BioSeq-BLM: a platform for analyzing DNA, RNA and protein sequences based on biological language models☆14Aug 21, 2022Updated 4 years ago
- Standardized data set for machine learning of protein structure☆919Nov 18, 2020Updated 5 years ago
- ☆16Jul 13, 2022Updated 4 years ago
- Interactive Python notebooks for PDBe API training☆61Jun 22, 2026Updated 2 months ago
- Evolutionary couplings from protein and RNA sequence alignments☆315Apr 20, 2026Updated 4 months ago
- some tools for working with protein (PDB) files in tensorflow☆11Jul 9, 2019Updated 7 years ago
- ProtVec can be used in protein interaction predictions, structure prediction, and protein data visualization.☆34Dec 8, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Code for generating model and predictions for CAFA5 competition 2023 (4th place solution)☆19Aug 3, 2026Updated 3 weeks ago
- ☆189Feb 8, 2022Updated 4 years ago
- ☆18Nov 24, 2019Updated 6 years ago
- ☆24Mar 29, 2021Updated 5 years ago
- Reimplementation of the UniRep protein featurization model.☆108Sep 3, 2024Updated last year
- ☆12Nov 26, 2023Updated 2 years ago
- DeepContact Software☆26Jun 16, 2018Updated 8 years ago