Alternatives and similar repositories for SeqVec

Users that are interested in SeqVec are comparing it to the libraries listed below

• mheinzinger / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆72Updated 4 years ago
• tbepler / prose
  Multi-task and masked language model-based protein sequence embedding models.
  ☆102Updated 3 years ago
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆59Updated 2 years ago
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆203Updated last year
• soedinglab / CCMpred
  Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
  ☆107Updated last year
• PaccMann / paccmann_proteomics
  PaccMann models for protein language modeling
  ☆42Updated 3 years ago
• debbiemarkslab / DeepSequence
  A generative latent variable model for biological sequence families.
  ☆219Updated 3 years ago
• aqlaboratory / rgn2
  ☆106Updated last year
• MachineLearningLifeScience / meaningful-protein-representations
  ☆109Updated 3 years ago
• tadorfer / protlearn
  A Python package for extracting protein sequence features
  ☆59Updated 2 years ago
• RosettaCommons / trRosetta2
  Repository for publicly available deep learning models developed in Rosetta community
  ☆115Updated 3 years ago
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆125Updated 3 years ago
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆96Updated 2 weeks ago
• gersteinlab / ThermoNet
  ThermoNet is a computational method for quantitative prediction of the impact of single-point mutations on protein thermodynamic stabilit…
  ☆117Updated last year
• fhalab / embeddings_reproduction
  ☆128Updated 4 years ago
• HannesStark / protein-localization
  Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…
  ☆63Updated last year
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆151Updated last year
• varun-shanker / structural-evolution
  ☆108Updated 10 months ago
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆62Updated 3 years ago
• oxpig / AbLang
  AbLang: A language model for antibodies
  ☆140Updated last year
• debbiemarkslab / SeqDesign
  Protein design and variant prediction using autoregressive generative models
  ☆103Updated last year
• csi-greifflab / Absolut
  Unconstrained lattice antibody-antigen bindings generator
  ☆109Updated 11 months ago
• twopin / CAMP
  predicting peptide-protein interactions
  ☆131Updated last year
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆112Updated last year
• gjoni / trDesign
  trRosetta for protein design
  ☆179Updated 4 years ago
• Merck / BioPhi
  BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…
  ☆188Updated 3 weeks ago
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆139Updated 4 months ago
• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆140Updated last month
• nstrodt / UDSMProt
  Protein sequence classification with self-supervised pretraining
  ☆82Updated 3 years ago
• jertubiana / ScanNet
  ☆126Updated last year