Protein sequence classification with self-supervised pretraining
☆82Nov 29, 2021Updated 4 years ago
Alternatives and similar repositories for UDSMProt
Users that are interested in UDSMProt are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for reproducing results of "Unsupervised embeddings is all you need for protein function prediction"☆41Jul 6, 2023Updated 3 years ago
- Major Histocompatibility Complex (MHC) Binding Affinity Prediction☆10Apr 22, 2021Updated 5 years ago
- Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019☆262Jun 16, 2021Updated 5 years ago
- UniRep model, usage, and examples.☆367Mar 1, 2026Updated 8 months ago
- ☆11Nov 19, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆95Jul 13, 2023Updated 3 years ago
- Homology reduced UniProt, train-/valid-/testsets for language modeling☆16Apr 20, 2022Updated 4 years ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆745Dec 11, 2022Updated 3 years ago
- Predicting protein structure through sequence modeling☆112May 4, 2020Updated 6 years ago
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Jan 30, 2019Updated 7 years ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆63Aug 3, 2024Updated 2 years ago
- Trainable representation analysis study repository☆44Apr 5, 2022Updated 4 years ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆42Aug 29, 2025Updated last year
- Modelling the Language of Life - Deep Learning Protein Sequences☆122Sep 15, 2020Updated 6 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Unsupervised neural network for learning embeddings of GO terms.☆22Feb 19, 2022Updated 4 years ago
- ☆110Mar 7, 2022Updated 4 years ago
- ☆584Apr 7, 2026Updated 6 months ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,324May 22, 2025Updated last year
- Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."☆305May 1, 2025Updated last year
- ☆261Jul 31, 2024Updated 2 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆76Dec 28, 2020Updated 5 years ago
- ☆10Feb 14, 2022Updated 4 years ago
- Python program, based on Prody, for pathogenicity prediction of human missense variants☆10Jun 29, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆27Updated this week
- Deep functional residue identification☆354Mar 24, 2023Updated 3 years ago
- The standalone version / cli-tool of SPOT-Contact-Single available for public use for research purposes.☆16Feb 1, 2024Updated 2 years ago
- Get protein embeddings from protein sequences☆511Apr 28, 2023Updated 3 years ago
- We propose PepBCL, a novel BERT (Bidirectional Encoder Representation from Transformers)-based Contrastive Learning framework to predict …☆19Mar 29, 2023Updated 3 years ago
- mirror of https://zhanglab.ccmb.med.umich.edu/EDTSurf/☆10Jun 20, 2023Updated 3 years ago
- ☆41Apr 24, 2018Updated 8 years ago
- Parametric Building of de novo Functional Topologies☆46Mar 11, 2022Updated 4 years ago
- Predict protein local properties using sequence or profile information.☆23Nov 16, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Python package for extracting protein sequence features☆62Aug 23, 2022Updated 4 years ago
- Differentiable Pairing using Soft Scores☆11May 20, 2024Updated 2 years ago
- Web cards/apps describing peptides☆31Apr 26, 2023Updated 3 years ago
- Deep learning based alignment-free method for protein family modeling and prediction☆16Jul 31, 2018Updated 8 years ago
- Learning protein representation for rigid-body docking☆22Nov 2, 2019Updated 7 years ago
- Official Pytorch implementation of PLUS (Protein sequence representations Learned Using Structural information), IEEE Access 2021☆42Sep 5, 2023Updated 3 years ago
- ML toolset for creating TED: The Encyclopedia of Domains☆29May 29, 2025Updated last year