nstrodt / UDSMProtLinks
Protein sequence classification with self-supervised pretraining
☆82Updated 3 years ago
Alternatives and similar repositories for UDSMProt
Users that are interested in UDSMProt are comparing it to the libraries listed below
Sorting:
- Multi-task and masked language model-based protein sequence embedding models.☆101Updated 4 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆72Updated 4 years ago
- PaccMann models for protein language modeling☆42Updated 3 years ago
- A Python package for extracting protein sequence features☆59Updated 2 years ago
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆104Updated last month
- ☆109Updated 3 years ago
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆64Updated last year
- Modelling the Language of Life - Deep Learning Protein Sequences☆119Updated 4 years ago
- ☆106Updated last year
- ☆58Updated 2 years ago
- A PyTorch implementation of GCN with mutual attention for protein-protein interaction prediction☆61Updated 3 years ago
- AbLang: A language model for antibodies☆142Updated last year
- pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"☆114Updated last year
- Efficient evolution from protein language models☆207Updated last year
- Protein function prediction using a variational autoencoder☆93Updated 7 years ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆60Updated 10 months ago
- ThermoNet is a computational method for quantitative prediction of the impact of single-point mutations on protein thermodynamic stabilit…☆117Updated last year
- Analysis and figure code from Alley et al. 2019.☆59Updated 2 years ago
- Protein design and variant prediction using autoregressive generative models☆106Updated last year
- A repository for neural representational learning of RNA secondary structures☆32Updated 5 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated last year
- Collecting AMP MIC data from different sources, then running a GAN to output promising sequences☆79Updated 10 months ago
- Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.☆87Updated 4 years ago
- Neural networks for deep mutational scanning data☆69Updated 3 weeks ago
- A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences☆96Updated 2 years ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆87Updated last year
- ☆36Updated 2 years ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆101Updated 9 months ago
- ☆193Updated 3 years ago
- Protein-compound affinity prediction through unified RNN-CNN☆147Updated 11 months ago