nstrodt / UDSMProtLinks
Protein sequence classification with self-supervised pretraining
☆82Updated 4 years ago
Alternatives and similar repositories for UDSMProt
Users that are interested in UDSMProt are comparing it to the libraries listed below
Sorting:
- Modelling the Language of Life - Deep Learning Protein Sequences☆76Updated 5 years ago
- A Python package for extracting protein sequence features☆62Updated 3 years ago
- Multi-task and masked language model-based protein sequence embedding models.☆105Updated 4 years ago
- PaccMann models for protein language modeling☆43Updated 4 years ago
- ☆110Updated 3 years ago
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆107Updated 8 months ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆71Updated last year
- ☆109Updated 2 years ago
- Neural networks for deep mutational scanning data☆72Updated 8 months ago
- ☆60Updated 3 years ago
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆74Updated 2 years ago
- A repository for neural representational learning of RNA secondary structures☆32Updated 5 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆60Updated 4 years ago
- ☆127Updated 4 years ago
- Fully convolutional neural networks for protein residue-residue contact prediction☆43Updated 6 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆122Updated 5 years ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆94Updated 2 years ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆34Updated 5 months ago
- Repository for publicly available deep learning models developed in Rosetta community☆123Updated 4 years ago
- Analysis and figure code from Alley et al. 2019.☆59Updated 2 years ago
- Protein language model trained on coding DNA☆53Updated last year
- Evolutionary velocity with protein language models☆97Updated 2 months ago
- Collecting AMP MIC data from different sources, then running a GAN to output promising sequences☆87Updated last year
- pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"☆122Updated last year
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆109Updated last month
- PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)☆20Updated 2 years ago
- Protein design and variant prediction using autoregressive generative models☆119Updated 2 years ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆61Updated last year
- Paratope Prediction using Deep Learning☆61Updated 2 years ago
- Public repository describing training and testing of AntiBERTa.☆61Updated 2 years ago