Alternatives and similar repositories for UDSMProt:

Users that are interested in UDSMProt are comparing it to the libraries listed below

• mheinzinger / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆72Updated 4 years ago
• PaccMann / paccmann_proteomics
  PaccMann models for protein language modeling
  ☆42Updated 3 years ago
• tbepler / prose
  Multi-task and masked language model-based protein sequence embedding models.
  ☆100Updated 3 years ago
• tadorfer / protlearn
  A Python package for extracting protein sequence features
  ☆59Updated 2 years ago
• MachineLearningLifeScience / meaningful-protein-representations
  ☆109Updated 3 years ago
• Rostlab / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆119Updated 4 years ago
• jaswindersingh2 / SPOT-RNA
  RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.
  ☆100Updated 2 years ago
• zswitten / Antimicrobial-Peptides
  Collecting AMP MIC data from different sources, then running a GAN to output promising sequences
  ☆75Updated 8 months ago
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆71Updated 11 months ago
• HarveyYan / RNAonGraph
  A repository for neural representational learning of RNA secondary structures
  ☆32Updated 5 years ago
• aqlaboratory / rgn2
  ☆104Updated last year
• gitter-lab / nn4dms
  Neural networks for deep mutational scanning data
  ☆68Updated 5 months ago
• HannesStark / protein-localization
  Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…
  ☆62Updated last year
• kWeissenow / EMBER2
  Alignment-free structure prediction using protein language models
  ☆22Updated 2 years ago
• MartinThoma / propy3
  A Python 3 version of the protein descriptor package propy
  ☆41Updated 2 years ago
• psipred / DMPfold
  De novo protein structure prediction using iteratively predicted structural constraints
  ☆57Updated 3 years ago
• alex-hh / deep-protein-generation
  ☆56Updated 2 years ago
• biomed-AI / GraphSite
  GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures
  ☆59Updated 8 months ago
• RosettaCommons / trRosetta2
  Repository for publicly available deep learning models developed in Rosetta community
  ☆114Updated 3 years ago
• Shen-Lab / DeepAffinity
  Protein-compound affinity prediction through unified RNN-CNN
  ☆143Updated 9 months ago
• mana438 / RNABERT
  ☆52Updated last year
• uci-cbcl / UFold
  ☆68Updated last year
• oxpig / AbLang
  AbLang: A language model for antibodies
  ☆138Updated last year
• dohlee / antiberty-pytorch
  An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.
  ☆24Updated last year
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆58Updated 4 years ago
• eliberis / parapred
  Paratope Prediction using Deep Learning
  ☆59Updated last year
• stamakro / GCN-for-Structure-and-Function
  Code for reproducing results of "Unsupervised embeddings is all you need for protein function prediction"
  ☆39Updated last year
• Biomatter-Designs / ProteinGAN
  ☆194Updated 3 years ago
• soedinglab / CCMpred
  Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
  ☆107Updated last year
• samsinai / VAE_protein_function
  Protein function prediction using a variational autoencoder
  ☆93Updated 7 years ago