Alternatives and similar repositories for SeqDesign

Users that are interested in SeqDesign are comparing it to the libraries listed below

• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆144Updated 3 months ago
• aqlaboratory / rgn2
  ☆108Updated 2 years ago
• martinez-zacharya / TRILL
  Sandbox for Deep-Learning based Computational Protein Design
  ☆119Updated last week
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆86Updated last year
• NREL / EvoProtGrad
  Directed evolution of proteins in sequence space with gradients
  ☆93Updated last month
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆129Updated 4 years ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆125Updated 2 weeks ago
• anton-bushuiev / PPIRef
  Dataset and package for working with protein-protein interactions in 3D
  ☆96Updated 7 months ago
• RosettaCommons / trRosetta2
  Repository for publicly available deep learning models developed in Rosetta community
  ☆120Updated 4 years ago
• oxpig / AbLang
  AbLang: A language model for antibodies
  ☆151Updated 2 years ago
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆61Updated 2 years ago
• varun-shanker / structural-evolution
  ☆116Updated last year
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆46Updated 2 years ago
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆109Updated 6 months ago
• Graylab / IgLM
  Generative Language Modeling for Antibody Design
  ☆173Updated last year
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆109Updated last year
• jproney / AF2Rank
  ☆114Updated 3 years ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆77Updated 2 months ago
• amyxlu / cheap-proteins
  Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…
  ☆145Updated 7 months ago
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆127Updated 2 weeks ago
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆105Updated last month
• levinthal / Pallatom
  ☆128Updated 6 months ago
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆73Updated 4 years ago
• Exscientia / abodybuilder3
  ☆71Updated last year
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆113Updated last month
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆91Updated 3 months ago
• marcellszi / rna3db
  A dataset for training and benchmarking deep learning models for RNA structure prediction
  ☆60Updated 2 weeks ago
• AbSciBio / unlocking-de-novo-antibody-design
  ☆132Updated last year
• ProteinDesignLab / protein_seq_des
  Code for our paper "Protein sequence design with a learned potential"
  ☆81Updated 2 years ago
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆166Updated last year