Protein design and variant prediction using autoregressive generative models
☆120Jan 23, 2024Updated 2 years ago
Alternatives and similar repositories for SeqDesign
Users that are interested in SeqDesign are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Protein design and variant prediction using autoregressive generative models☆24Feb 27, 2023Updated 3 years ago
- ☆23Jul 4, 2021Updated 4 years ago
- ☆18Mar 13, 2024Updated 2 years ago
- A generative latent variable model for biological sequence families.☆250Mar 15, 2022Updated 4 years ago
- Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.☆174Nov 30, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆118Dec 7, 2022Updated 3 years ago
- ☆96Oct 14, 2025Updated 5 months ago
- Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies☆412Sep 3, 2023Updated 2 years ago
- Code for our paper "Protein sequence design with a learned potential"☆83Sep 8, 2023Updated 2 years ago
- A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …☆27Aug 7, 2020Updated 5 years ago
- open source repository☆147Nov 30, 2023Updated 2 years ago
- This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"☆15Jun 7, 2023Updated 2 years ago
- ☆192Feb 8, 2022Updated 4 years ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆82Mar 7, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ☆23Jun 24, 2022Updated 3 years ago
- ☆26May 9, 2022Updated 3 years ago
- ☆56Feb 16, 2026Updated last month
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Oct 27, 2021Updated 4 years ago
- A variational autoencoder that directly generates the 3D coordinates of immunoglobulin protein backbones.☆32Jul 25, 2022Updated 3 years ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆33Aug 10, 2023Updated 2 years ago
- ☆136Aug 8, 2024Updated last year
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆238Mar 26, 2026Updated 2 weeks ago
- Code for our paper "Protein sequence design with a learned potential"☆34Aug 5, 2021Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Tutorial files☆12Aug 7, 2024Updated last year
- protein docking stuff☆52Apr 2, 2026Updated last week
- RoseTTAFold2 protein/nucleic acid complex prediction☆380Jun 3, 2024Updated last year
- Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure☆52Mar 7, 2025Updated last year
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆99Jul 29, 2024Updated last year
- Fitness landscapes for antibodies☆160Mar 23, 2026Updated 2 weeks ago
- Structure-conditioned masked language modeling for protein sequence design☆73Jan 31, 2024Updated 2 years ago
- Evolutionary couplings from protein and RNA sequence alignments☆300Oct 23, 2025Updated 5 months ago
- ☆74Feb 13, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆181Oct 7, 2025Updated 6 months ago
- Quantifying the nativeness of antibody sequences using long short-term memory networks☆18Dec 17, 2021Updated 4 years ago
- ☆77Oct 27, 2021Updated 4 years ago
- ☆137Jun 3, 2025Updated 10 months ago
- Parametric Building of de novo Functional Topologies☆44Mar 11, 2022Updated 4 years ago
- Code used in the manuscript for De Novo Design of Bioactive Protein Switches☆16May 16, 2019Updated 6 years ago
- ☆13Dec 5, 2024Updated last year