Alternatives and similar repositories for SeqDesign

Users that are interested in SeqDesign are comparing it to the libraries listed below

• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆127Updated 2 months ago
• robpearc / DeepFoldRNA
  ☆35Updated last year
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆78Updated last year
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆59Updated 2 years ago
• NREL / EvoProtGrad
  Directed evolution of proteins in sequence space with gradients
  ☆86Updated 11 months ago
• jproney / AF2Rank
  ☆108Updated 2 years ago
• aqlaboratory / rgn2
  ☆107Updated last year
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆58Updated 5 months ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆114Updated 4 months ago
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆43Updated last year
• oxpig / AbLang
  AbLang: A language model for antibodies
  ☆143Updated last year
• RosettaCommons / DeepAb
  Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.
  ☆160Updated 2 years ago
• csi-greifflab / Absolut
  Unconstrained lattice antibody-antigen bindings generator
  ☆110Updated last year
• varun-shanker / structural-evolution
  ☆109Updated last year
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆99Updated last month
• Graylab / IgLM
  Generative Language Modeling for Antibody Design
  ☆157Updated 9 months ago
• idmjky / EvolvePro
  PLM based active learning model for protein engineering
  ☆82Updated 11 months ago
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆144Updated 5 months ago
• martinez-zacharya / TRILL
  Sandbox for Deep-Learning based Computational Protein Design
  ☆113Updated 3 weeks ago
• ProteinDesignLab / protein_seq_des
  Code for our paper "Protein sequence design with a learned potential"
  ☆79Updated last year
• amyxlu / cheap-proteins
  Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…
  ☆127Updated 3 months ago
• samsledje / D-SCRIPT
  A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions
  ☆100Updated last week
• anton-bushuiev / PPIRef
  Dataset and package for working with protein-protein interactions in 3D
  ☆94Updated 2 months ago
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆66Updated 3 years ago
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆101Updated 9 months ago
• RosettaCommons / trRosetta2
  Repository for publicly available deep learning models developed in Rosetta community
  ☆117Updated 3 years ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆59Updated 4 years ago
• ostrokach / proteinsolver
  Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.
  ☆60Updated 4 years ago
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆104Updated 4 months ago
• AbSciBio / igdesign
  ☆41Updated 6 months ago