psipred / DMPfold
De novo protein structure prediction using iteratively predicted structural constraints
☆55Updated 3 years ago
Alternatives and similar repositories for DMPfold:
Users that are interested in DMPfold are comparing it to the libraries listed below
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆53Updated 2 years ago
- Pseudo Likelihood Maximization for protein in Julia☆50Updated last month
- Protein design and variant prediction using autoregressive generative models☆95Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆57Updated 3 years ago
- Analysis and figure code from Alley et al. 2019.☆58Updated last year
- Fully convolutional neural networks for protein residue-residue contact prediction☆44Updated 5 years ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆83Updated last year
- Fast and accurate protein structure prediction☆49Updated last month
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆34Updated 4 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆71Updated 9 months ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆32Updated 2 years ago
- A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …☆26Updated 4 years ago
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆100Updated 3 years ago
- Direct coupling analysis software for protein and RNA sequences☆50Updated last year
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆54Updated 2 years ago
- ☆56Updated 2 years ago
- ☆35Updated 2 years ago
- ☆29Updated 4 years ago
- Code for our paper "Protein sequence design with a learned potential"☆80Updated last year
- Fast protein structure searching or your money back☆95Updated last week
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆83Updated 5 months ago
- PDNET: A fully open-source framework for deep learning protein real-valued distances☆34Updated 3 years ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆107Updated last year
- Bioinformatics and Cheminformatics protocols for peptide analysis☆38Updated 2 years ago
- ☆80Updated 4 months ago
- Mutation effects predicted from sequence co-variation☆63Updated 7 years ago
- RaptorX-Property: a Standalone Package for Protein Structure Property Prediction☆15Updated 5 years ago
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆93Updated 2 weeks ago
- Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure☆49Updated 3 years ago
- Contact map alignment☆41Updated 4 years ago