psipred / DMPfoldLinks
De novo protein structure prediction using iteratively predicted structural constraints
☆60Updated 3 years ago
Alternatives and similar repositories for DMPfold
Users that are interested in DMPfold are comparing it to the libraries listed below
Sorting:
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆57Updated 3 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated last year
- Fully convolutional neural networks for protein residue-residue contact prediction☆43Updated 6 years ago
- PDNET: A fully open-source framework for deep learning protein real-valued distances☆36Updated 4 years ago
- Fast and accurate protein structure prediction☆56Updated 10 months ago
- Repository for publicly available deep learning models developed in Rosetta community☆120Updated 4 years ago
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆98Updated 3 years ago
- Pseudo Likelihood Maximization for protein in Julia☆51Updated 6 months ago
- Code for our paper "Protein sequence design with a learned potential"☆80Updated 2 years ago
- Contact map alignment☆41Updated 4 years ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆41Updated 2 years ago
- Paratope Prediction using Deep Learning☆61Updated 2 years ago
- Protein design and variant prediction using autoregressive generative models☆115Updated last year
- deep protein solubility prediction☆40Updated 6 years ago
- ☆59Updated 2 years ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆92Updated 2 years ago
- ☆109Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- AlphaLink: Integrating crosslinking MS data into OpenFold☆71Updated last year
- DeepContact Software☆26Updated 7 years ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆60Updated 7 months ago
- ☆88Updated last year
- Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.☆59Updated 4 years ago
- Direct coupling analysis software for protein and RNA sequences☆53Updated 3 months ago
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆108Updated last month
- Fast protein structure searching or your money back☆115Updated last month
- Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix☆35Updated 3 years ago
- pdbx is a parser module in python for structures of the protein data bank in the mmcif format☆29Updated last year
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 5 years ago
- ☆35Updated 4 years ago