ivanjayapurna / low-n-protein-engineeringLinks
A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented in Biswas et al.
☆27Updated 4 years ago
Alternatives and similar repositories for low-n-protein-engineering
Users that are interested in low-n-protein-engineering are comparing it to the libraries listed below
Sorting:
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- An antibody-specific language model focusing on NGL prediction☆17Updated 3 months ago
- ☆49Updated 2 months ago
- ☆64Updated 3 years ago
- Tool for modelling the CDRs of antibodies☆48Updated 2 years ago
- ☆19Updated 4 years ago
- ☆41Updated 5 months ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Updated 3 years ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆69Updated this week
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 3 years ago
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆57Updated last year
- Efficient manipulation of protein structures in Python☆54Updated 7 months ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated last year
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆54Updated 2 months ago
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆35Updated 3 years ago
- RNA Multiple Sequence Alignment☆42Updated last year
- DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.☆24Updated 3 months ago
- ☆68Updated 9 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆66Updated 10 months ago
- ☆39Updated 3 weeks ago
- ☆40Updated 9 months ago
- The code used to generate the results from Parkinson / Hard et al. 2022☆17Updated last month
- Public repository describing training and testing of AntiBERTa.☆59Updated 2 years ago
- ☆58Updated 2 years ago
- ☆46Updated last year
- Active Learning-Assisted Directed Evolution for Protein Engineering☆58Updated 7 months ago
- A collection of *fold* tools☆21Updated 2 years ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆40Updated last month
- Ultra-fast in-silico structure mutation☆34Updated 2 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆75Updated last year