cellgeni / batchbenchLinks
☆46Updated 3 years ago
Alternatives and similar repositories for batchbench
Users that are interested in batchbench are comparing it to the libraries listed below
Sorting:
- ☆44Updated last week
- A tool that allows to get UMI counts from a single cell protein assay☆86Updated 7 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆91Updated 6 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated 2 years ago
- scWGCNA☆61Updated 3 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 5 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆70Updated 4 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆64Updated 3 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆77Updated 2 years ago
- R package for semi-supervised single-cell data integration☆90Updated 3 months ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆80Updated 10 months ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 4 years ago
- ☆41Updated 4 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆112Updated last month
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆93Updated this week
- Capybara: A computational tool to measure cell identity and fate transitions☆60Updated 3 years ago
- Single Cell Cluster Evaluation☆98Updated 4 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated 2 years ago
- Publication Page for MPAL Paper 2019☆83Updated 5 years ago
- ☆74Updated 2 years ago
- ☆63Updated 5 years ago
- ☆55Updated 4 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- An R toolkit for estimation of cell composition from bulk expression data☆81Updated 5 months ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆123Updated 7 months ago
- Framework for sensitive DE testing (using neighbourhoods)☆75Updated 3 weeks ago