cellgeni / batchbenchLinks
☆46Updated 3 years ago
Alternatives and similar repositories for batchbench
Users that are interested in batchbench are comparing it to the libraries listed below
Sorting:
- Single Cell Cluster Evaluation☆98Updated 4 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 5 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆63Updated 3 years ago
- ☆63Updated 5 years ago
- ☆45Updated last month
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated 2 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆87Updated 8 months ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆72Updated 4 years ago
- R package for semi-supervised single-cell data integration☆94Updated 3 weeks ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆94Updated 7 months ago
- Capybara: A computational tool to measure cell identity and fate transitions☆60Updated 3 years ago
- scWGCNA☆61Updated 3 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆80Updated 11 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆91Updated 3 weeks ago
- ☆64Updated 6 years ago
- Publication Page for MPAL Paper 2019☆84Updated 5 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆46Updated 4 years ago
- ☆55Updated 5 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆103Updated 3 weeks ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 6 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated last month
- Metacell - Single-cell mRNA Analysis☆118Updated 11 months ago
- R implementation of MULTI-seq sample classification workflow☆65Updated 2 years ago
- Normalize CITEseq Data☆66Updated 2 months ago
- Clone of the Bioconductor repository for the scran package.☆46Updated last year
- ☆41Updated 4 years ago
- ☆61Updated 4 years ago
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago