cellgeni / batchbenchLinks
☆46Updated 3 years ago
Alternatives and similar repositories for batchbench
Users that are interested in batchbench are comparing it to the libraries listed below
Sorting:
- ☆61Updated 5 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 4 years ago
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆73Updated 5 months ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆62Updated 3 years ago
- ☆55Updated 4 years ago
- R implementation of MULTI-seq sample classification workflow☆62Updated last year
- marker-based purification of cell types from single-cell RNA-seq datasets☆112Updated last month
- Clone of the Bioconductor repository for the scran package.☆42Updated 9 months ago
- R package for semi-supervised single-cell data integration☆82Updated last month
- ☆68Updated last year
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 2 months ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆62Updated 3 years ago
- Analysis of cell-cell communication at single-cell resolution☆102Updated 9 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆81Updated 3 weeks ago
- R package for Pathway RespOnsive GENe activity inference☆106Updated 2 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆94Updated 5 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Framework for sensitive DE testing (using neighbourhoods)☆70Updated 11 months ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆87Updated 11 months ago
- scWGCNA☆61Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆58Updated 3 weeks ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆105Updated 2 years ago
- ☆63Updated 4 years ago
- R package for pathway analysis in scRNA-seq data☆73Updated 10 months ago
- An R toolkit for estimation of cell composition from bulk expression data☆74Updated last week