General notes and resources on how to analyze Spatial Transcriptomics data
☆12Jun 20, 2023Updated 3 years ago
Alternatives and similar repositories for ST-analysis
Users that are interested in ST-analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Oct 18, 2023Updated 2 years ago
- Vesalius: Dissecting Tissue Anatomy from Spatial Transcriptomic Data☆20Jan 26, 2026Updated 6 months ago
- Supplementary files and notebooks to recreate figures.☆22Jun 15, 2026Updated last month
- pipelines to process scRNA-seq data☆12Jan 11, 2021Updated 5 years ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆23Nov 10, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆17Oct 3, 2022Updated 3 years ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆36Jan 8, 2025Updated last year
- Benchmark of GRNs using the GRETA pipeline☆33Jun 9, 2026Updated last month
- ☆13Dec 23, 2021Updated 4 years ago
- ☆12May 30, 2023Updated 3 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆34Nov 28, 2025Updated 8 months ago
- Code used to analyze datasets and generate figures from Williams et al., 2021☆16Jun 29, 2021Updated 5 years ago
- Senescent Cell Identification☆53Feb 22, 2024Updated 2 years ago
- A 3-day R course given in University College Cork that encompasses various elements off reproducible research facilitated through RStudio…☆11Jun 17, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A tool to perform comprehensive analysis of high-dimensional radiomic datasets☆14Jan 28, 2022Updated 4 years ago
- Client to access ExperimentHub resources☆11Jun 15, 2026Updated last month
- Score an Affinity Purification Mass Spectrometry Proteomics Experiment for Interactor Confidence☆11Jun 24, 2015Updated 11 years ago
- 将速铂下载工具进行封装,以便高效方便地批量下载SRA测序数据。☆11Sep 1, 2020Updated 5 years ago
- A listing of the commands, protocols and other notes that I take on a daily basis☆11Oct 25, 2023Updated 2 years ago
- Data visualization tools for brain tumour datasets☆15Sep 13, 2021Updated 4 years ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 5 years ago
- This is a repository of the scLinaX R package developed in the Tomofuji et al (Quantification of escape from X chromosome inactivation wi…☆11Sep 12, 2025Updated 10 months ago
- parallel c prinseq☆21Aug 10, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. This is a novel R package of the RaceID3 and S…☆44Jun 16, 2026Updated last month
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 3 months ago
- repository for the single cell RNA-Seq workshop☆31Apr 20, 2021Updated 5 years ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆20Oct 25, 2024Updated last year
- ☆74May 28, 2025Updated last year
- Differential Correlation across Ranked Samples☆13May 31, 2023Updated 3 years ago
- Repository for the Instructor Trainers community☆12Updated this week
- R interface to megadepth: BigWig and BAM related utilities☆14Mar 31, 2026Updated 3 months ago
- Novel joint clustering method with scRNA-seq and CITE-seq data☆10Jun 22, 2021Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Single-cell Graph Cuts Optimization☆16Apr 27, 2024Updated 2 years ago
- ☆12Nov 7, 2022Updated 3 years ago
- Intro Shiny workshop given at R-Ladies Tunisia online meetup, July 4 2020☆11Jul 4, 2020Updated 6 years ago
- ☆13Jun 22, 2026Updated last month
- Test genes for Spatial Variation☆15Dec 20, 2024Updated last year
- Module 4 for HKU Single-cell Workshop☆12Jul 6, 2021Updated 5 years ago
- How some homework solutions should work on some small examples☆11Aug 25, 2015Updated 10 years ago