eleozzr / descLinks
Deep Embedding for Single-cell Clustering
☆86Updated last year
Alternatives and similar repositories for desc
Users that are interested in desc are comparing it to the libraries listed below
Sorting:
- scDeepCluster for Single Cell RNA-seq data☆101Updated 11 months ago
- Single-cell ATAC-seq analysis via Latent feature Extraction☆102Updated last year
- ☆48Updated 6 years ago
- A benchmark of batch-effect correction methods for single-cell RNA sequencing data☆76Updated 3 years ago
- Iterative transfer learning with neural network improves clustering and cell type classification in single-cell RNA-seq analysis☆54Updated 2 weeks ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆75Updated 5 months ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆29Updated 4 years ago
- Additional code and analysis from the single-cell integration benchmarking project☆67Updated 2 years ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆42Updated last year
- Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"☆57Updated 6 years ago
- An actionable database of publicly available single-cell RNA-seq data☆41Updated 6 years ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆140Updated last year
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆39Updated 2 years ago
- Code for the MNN manuscript figures☆50Updated 6 years ago
- BERMUDA (Batch Effect ReMoval Using Deep Autoencoders) is a novel transfer-learning-based method for batch correction in scRNA-seq data.☆30Updated 5 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- Realistic in silico generation and augmentation of single cell RNA-seq data using Generative Adversarial Neural Networks☆83Updated last year
- An accurate and efficient deep learning method for single-cell RNA-seq data imputation☆89Updated 3 years ago
- ☆59Updated last year
- Batch balanced KNN☆162Updated last year
- This contains the dataset for comparing scRNA-seq analysis methods☆92Updated 4 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆74Updated 5 months ago
- A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.☆92Updated 11 months ago
- Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space☆78Updated last week
- ☆45Updated 2 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆62Updated 3 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆50Updated 3 years ago
- Single-cell RNA-seq Gene Expression Recovery☆109Updated 6 months ago
- ☆100Updated 2 years ago
- ☆130Updated last year