Oshlack / splatter-paperLinks
Data and analysis for the Splatter paper
☆29Updated 7 years ago
Alternatives and similar repositories for splatter-paper
Users that are interested in splatter-paper are comparing it to the libraries listed below
Sorting:
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 5 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- ☆29Updated 2 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- ☆22Updated 5 years ago
- Multi-omics studies are available here☆52Updated 3 years ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆54Updated last year
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data☆35Updated 4 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48Updated 5 years ago
- Fast motif matching in R☆46Updated last year
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- ☆37Updated last month
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆105Updated 2 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 5 years ago
- Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis☆46Updated 5 years ago
- This contains the dataset for comparing scRNA-seq analysis methods☆91Updated 5 years ago
- Single-cell Hierarchical Poisson Factorization☆73Updated 3 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 3 years ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆37Updated 3 years ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆35Updated 3 years ago
- ☆55Updated 6 months ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆56Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆31Updated 3 years ago
- scNMT-seq gastrulation☆42Updated 2 years ago
- R package with motifs for use with chromVAR☆28Updated 7 years ago