Alternatives and similar repositories for splatter-paper:

Users that are interested in splatter-paper are comparing it to the libraries listed below

• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆40Updated 2 years ago
• czbiohub-sf / tabula-muris-vignettes
  Examples analyses using the single-cell RNA-seq data from mouse cell atlases
  ☆23Updated 5 years ago
• bioFAM / slalom
  ☆28Updated 2 years ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆40Updated 6 years ago
• BaderLab / AgingMouseBrainCCInx
  Predicted cell-cell interactions of the aging mouse brain
  ☆20Updated 5 years ago
• de-Boer-Lab / CisRegModels
  Scripts for building computational models of gene regulation with tensorflow
  ☆27Updated last year
• GreenleafLab / motifmatchr
  Fast motif matching in R
  ☆46Updated last year
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆13Updated 5 years ago
• csoneson / NativeRNAseqComplexTranscriptome
  Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"
  ☆19Updated 5 years ago
• SpatialTranscriptomicsResearch / std-nb
  Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018
  ☆21Updated 6 years ago
• satijalab / scChromHMM
  🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…
  ☆27Updated 3 years ago
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• markrobinsonuzh / scRNAseq_clustering_comparison
  A study to compare methods for clustering of scRNA-seq data
  ☆42Updated 7 months ago
• xzhoulab / DRComparison
  Comparison of dimensionality reduction methods
  ☆30Updated 4 years ago
• bvieth / scRNA-seq-pipelines
  Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"
  ☆53Updated 4 years ago
• GreenleafLab / chromVARmotifs
  R package with motifs for use with chromVAR
  ☆25Updated 7 years ago
• csoneson / rna_velocity_quant
  Evaluation of the effect of quantification choices on RNA velocity estimates
  ☆27Updated 3 years ago
• yanailab / moana
  Moana: Robust cell type classification of single-cell RNA-Seq data
  ☆24Updated 6 years ago
• YosefLab / scone
  ☆53Updated 3 weeks ago
• rargelaguet / thesis
  University of Cambridge PhD thesis
  ☆15Updated 4 years ago
• biobenkj / compartmap
  Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq
  ☆13Updated last week
• Winnie09 / imputationBenchmark
  benchmark for single-cell RNA-seq imputation methods
  ☆25Updated 11 months ago
• DeplanckeLab / ChromatinHD
  High-definition modeling of chromatin + transcriptomics data
  ☆22Updated 4 months ago
• SaskiaFreytag / cluster_benchmarking_code
  ☆16Updated 6 years ago
• cole-trapnell-lab / cicero
  ☆12Updated last year
• mruffalo / sc-rna-seq-pipeline
  ☆23Updated 5 years ago
• brianhie / trajectorama
  Multi-study integration of cellular trajectories
  ☆19Updated 4 years ago
• friedue / course_RNA-seq2015
  ☆14Updated 8 years ago
• Teichlab / celloline
  ☆20Updated 7 years ago
• caleblareau / asap_reproducibility
  Reproducing all analyses and figures for the ASAP-seq paper
  ☆29Updated 3 years ago