Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. This is a novel R package of the RaceID3 and StemID2 method including novel functionalities and performance improvements compared to the previous RaceID3/StemID2 version in the RaceID3_StemID2 repository. The RaceID3_StemID2 repository will not be updated …
☆44Nov 7, 2026Updated this week
Alternatives and similar repositories for RaceID3_StemID2_package
Users that are interested in RaceID3_StemID2_package are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.☆44Mar 3, 2017Updated 9 years ago
- ☆12May 30, 2023Updated 3 years ago
- scripts for analyzing data of macrophage development in human☆10Dec 8, 2019Updated 6 years ago
- Tumor-Infiltrating CD8 Lymphocytes states prediction☆15Feb 7, 2024Updated 2 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆48May 13, 2016Updated 10 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- CellNet, for cancer☆11Jul 14, 2022Updated 4 years ago
- simpler single cell RNAseq data clustering☆43Feb 28, 2025Updated last year
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆35Aug 16, 2021Updated 5 years ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆109Jul 3, 2023Updated 3 years ago
- BioC2020: Where Software and Biology Connect☆12Mar 15, 2023Updated 3 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Jul 1, 2020Updated 6 years ago
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆18Jun 3, 2021Updated 5 years ago
- Cell type purification by single-cell transcriptome-trained sorting☆16Jul 8, 2019Updated 7 years ago
- ☆28Feb 6, 2019Updated 7 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- spatial transcriptome, single cell☆77Mar 18, 2023Updated 3 years ago
- Linear trajectory inference for single-cell RNA-seq☆64Nov 26, 2025Updated 11 months ago
- ☆316Jun 16, 2026Updated 4 months ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆15Aug 26, 2026Updated 2 months ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Apr 21, 2025Updated last year
- R package for integrating and analyzing multiple single-cell datasets☆435Aug 18, 2026Updated 2 months ago
- An R package for multi-dimensional pathway enrichment analysis☆18Jan 8, 2026Updated 10 months ago
- A benchmark of batch-effect correction methods for single-cell RNA sequencing data☆78Jan 24, 2022Updated 4 years ago
- Visualization tool for integrating single cell phylogeny with genomic content to clearly display evolutionary progression and tumour hete…☆11Sep 12, 2017Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆127Jan 22, 2024Updated 2 years ago
- iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. …☆126Nov 10, 2025Updated last year
- R package for the inference of cell fate bias from single-cell RNA-seq data.☆22Jun 14, 2022Updated 4 years ago
- AUCell: score single cells with gene regulatory networks☆208Mar 9, 2024Updated 2 years ago
- Predicted cell-cell interactions of the aging mouse brain☆21Sep 24, 2019Updated 7 years ago
- Calculating Tumor microenvironment score☆29Jan 20, 2023Updated 3 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆247May 8, 2023Updated 3 years ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆503Apr 5, 2024Updated 2 years ago
- General notes and resources on how to analyze Spatial Transcriptomics data☆12Jun 20, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆10Nov 5, 2023Updated 3 years ago
- A record of the analysis pipelines used to create the HTAPP data☆34Apr 15, 2025Updated last year
- Clustering through Imputation and Dimensionality Reduction☆64Sep 21, 2017Updated 9 years ago
- BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…☆88Apr 14, 2026Updated 6 months ago
- Single-cell Orientation Tracing☆21Jan 23, 2022Updated 4 years ago
- R package for Bioconductor submission☆41Dec 8, 2022Updated 3 years ago
- ☆137Aug 23, 2026Updated 2 months ago
Are these results useful?