BERMUDA (Batch Effect ReMoval Using Deep Autoencoders) is a novel transfer-learning-based method for batch correction in scRNA-seq data.
☆30Dec 29, 2019Updated 6 years ago
Alternatives and similar repositories for BERMUDA
Users that are interested in BERMUDA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Sep 20, 2020Updated 6 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 4 years ago
- ☆11Jul 6, 2021Updated 5 years ago
- A benchmark of batch-effect correction methods for single-cell RNA sequencing data☆78Jan 24, 2022Updated 4 years ago
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆10Aug 4, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆46May 17, 2022Updated 4 years ago
- Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:☆24Jun 8, 2021Updated 5 years ago
- Python Implementation of MetaNeighbor scRNAseq Analysis Method☆11Aug 28, 2026Updated 2 months ago
- Deep Embedding for Single-cell Clustering☆89Apr 9, 2024Updated 2 years ago
- Batch effects removal method based on deep autoencoder and adversarial learning☆25Dec 28, 2024Updated last year
- supporting code for the multinomial single cell RNA-Seq paper☆54Jan 6, 2021Updated 5 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆181Jan 26, 2024Updated 2 years ago
- An accurate and efficient deep learning method for single-cell RNA-seq data imputation☆91Jan 31, 2022Updated 4 years ago
- An implementation of MNN (Mutual Nearest Neighbors) correct in python.☆78Jan 9, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Cell type purification by single-cell transcriptome-trained sorting☆16Jul 8, 2019Updated 7 years ago
- Comparison of dimensionality reduction methods☆30Mar 24, 2020Updated 6 years ago
- ☆16Jan 24, 2023Updated 3 years ago
- scGMAI: a Gaussian mixture model for clustering single-cell RNA-seq data based on deep autoencoder☆15Jun 7, 2021Updated 5 years ago
- mesa package for Methylation Enrichment Sequencing Analysis☆16Updated this week
- R package for transfer learning of single-cell RNA-seq denoising☆32Jun 14, 2022Updated 4 years ago
- COMET Single-Cell Marker Detection tool☆33Jun 21, 2022Updated 4 years ago
- Single-cell RNA-seq Gene Expression Recovery☆118Nov 28, 2024Updated last year
- Novel joint clustering method with scRNA-seq and CITE-seq data☆11Jun 22, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Batch balanced KNN☆180Oct 11, 2023Updated 3 years ago
- ☆101Mar 24, 2023Updated 3 years ago
- Discrete Distributional Differential Expression☆22Jan 3, 2019Updated 7 years ago
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Oct 25, 2019Updated 7 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 6 years ago
- ☆11Jan 7, 2020Updated 6 years ago
- Single Cell Generative Adversarial Network (scGAN)☆15May 29, 2020Updated 6 years ago
- Scripts for data and figure generation in SAVER paper☆19Jan 5, 2021Updated 5 years ago
- ☆15May 16, 2019Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A Python implementation of the model described in our publication "A convolutional neural network for common-coordinate registration of h…☆25Oct 21, 2021Updated 5 years ago
- Code for further development of the mutual nearest neighbours batch correction method, as implemented in the batchelor package.☆22Jan 6, 2020Updated 6 years ago
- a variational autoencoder method for clustering single-cell mutation data☆11Apr 17, 2024Updated 2 years ago
- ☆17Feb 11, 2021Updated 5 years ago
- ☆14Dec 24, 2021Updated 4 years ago
- Perturbational analysis by causality-aware generative model for single-cell RNA-sequencing data☆24Oct 7, 2026Updated 3 weeks ago
- Assembles a graph manifold from time series single-cell RNAseq data☆18May 11, 2021Updated 5 years ago