bvieth / scRNA-seq-pipelinesLinks
Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"
☆55Updated 4 years ago
Alternatives and similar repositories for scRNA-seq-pipelines
Users that are interested in scRNA-seq-pipelines are comparing it to the libraries listed below
Sorting:
- ☆55Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆78Updated 6 months ago
- ☆58Updated last year
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆42Updated 4 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated 2 years ago
- R package for robust clustering of single cell RNA sequencing data☆40Updated 2 years ago
- ☆34Updated 6 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆52Updated 4 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆62Updated last month
- R/Bioconductor package for working with 10x scATACseq data☆42Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆32Updated 5 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- epigenome analysis to rank transcription factors☆31Updated 2 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆45Updated 9 years ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆105Updated 2 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆43Updated last year
- An R toolkit for estimation of cell composition from bulk expression data☆78Updated 3 months ago
- Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)☆43Updated 4 years ago