Alternatives and similar repositories for MOJITOO:

Users that are interested in MOJITOO are comparing it to the libraries listed below

• csglab / GEDI
  Gene Expression Decomposition and Integration
  ☆17Updated 5 months ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆20Updated 10 months ago
• gillislab / MetaMarkers
  Efficiently compute robust markers across single-cell datasets
  ☆11Updated 3 years ago
• veltenlab / mitoClone
  ☆12Updated 3 years ago
• marrlab / CAR_T_TargetIdentification
  Computational identification of targets for CAR-T cell therapy in AML
  ☆16Updated 2 years ago
• broadinstitute / mix_seq_ms
  Code associated with MIX-seq manuscript
  ☆14Updated 4 years ago
• davemcg / scEiaD
  Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
  ☆25Updated last year
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆13Updated 5 years ago
• soumelis-lab / ICELLNET
  ☆19Updated 9 months ago
• MarioniLab / oor_benchmark
  A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data
  ☆13Updated 3 months ago
• data2intelligence / CytoSig_prediction
  Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts
  ☆12Updated last year
• dbrg77 / ISSAAC-seq
  ☆16Updated last year
• MarioniLab / geneBasisR
  R package for gene selection using k-NN graphs.
  ☆13Updated last year
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆22Updated 2 years ago
• alexQiSong / scSTEM
  Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…
  ☆18Updated 2 years ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 2 months ago
• cole-trapnell-lab / pseudospace
  ☆12Updated 5 years ago
• GreenleafLab / ChrAccR
  Analyzing chromatin accessibility data in R
  ☆18Updated last year
• raphael-group / netNMF-sc
  netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data
  ☆22Updated 3 years ago
• pachterlab / GFCP_2022
  RNA velocity validation
  ☆23Updated 2 years ago
• jiang-junyao / CACIMAR
  cross-species analysis of cell identities, markers and regulations
  ☆12Updated 2 months ago
• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆49Updated 5 months ago
• adoostparast / CellR
  CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq
  ☆15Updated 3 years ago
• bendemeo / shannonca
  Information-based dimensionality reduction
  ☆29Updated 2 months ago
• ayshwaryas / ddqc_R
  ☆10Updated 2 years ago
• lciernik / ANS_signature_scoring
  A gene expression signature scoring Python package.
  ☆12Updated 2 months ago
• crazyhottommy / scCustomize
  Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆16Updated 3 years ago
• BorchLab / Ibex
  Using BCR and expression for sequence embedding
  ☆19Updated this week
• MarioniLab / oor_design_reproducibility
  ☆14Updated last year
• greenelab / miQC
  Flexible, probablistic metrics for quality control of scRNA-seq data
  ☆19Updated 2 years ago