MOJITOO: a fast and universal method for integration of multimodal single cell data
☆12Oct 23, 2024Updated last year
Alternatives and similar repositories for MOJITOO
Users that are interested in MOJITOO are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- https://molecular-neurogenetics.github.io/truster/☆12Jul 14, 2025Updated last year
- This repository contains the code for reproducing all the results and figures from the preprint "Isoform specificity in the mouse primary…☆16Jul 16, 2021Updated 5 years ago
- ☆16Feb 25, 2017Updated 9 years ago
- A graphical interface for sklearn classification to introduce machine learning to biologists☆14Mar 19, 2025Updated last year
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- PhiSpace for continuous phenotyping single-cell and spatial transcriptomics data☆17Jul 3, 2026Updated 2 weeks ago
- Paired Insertion Counting for snATAC-seq data☆19Mar 15, 2026Updated 4 months ago
- comprehensive analysis of single-cell transcriptomics data☆25Jul 14, 2026Updated last week
- Metric learning-based graph-partitioned trajectory inference from single-cell data☆12Apr 28, 2023Updated 3 years ago
- ☆18Oct 22, 2024Updated last year
- ☆19May 30, 2022Updated 4 years ago
- scDREAMER for atlas-level integration of single-cell datasets using deep generative model paired with adversarial classifier☆49Apr 12, 2024Updated 2 years ago
- generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions.☆16Oct 19, 2019Updated 6 years ago
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆20Aug 29, 2023Updated 2 years ago
- R package for gene selection using k-NN graphs.☆14Jun 12, 2023Updated 3 years ago
- R package to do the Ligand Receptor Analysis Visualization☆50Jun 23, 2026Updated 3 weeks ago
- ☆49Feb 14, 2024Updated 2 years ago
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆22Feb 14, 2023Updated 3 years ago
- UniFORM: Towards Universal ImmunoFluorescence Normalization for Multiplex Tissue Imaging☆18Jul 30, 2025Updated 11 months ago
- time course regulatory analysis from paired gene expression and chromatin accessibility time course data☆11Nov 10, 2023Updated 2 years ago
- ☆14Apr 2, 2025Updated last year
- Course material for CSAMA 2015: Statistics and Computing in Genome Data Science☆11Mar 15, 2023Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Allele-Specific Expression by Single-Cell RNA Sequencing☆31Oct 15, 2020Updated 5 years ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Jan 11, 2023Updated 3 years ago
- ☆36Apr 15, 2025Updated last year
- Search the biomedical literature for protein interactions and protein associations☆11Nov 24, 2023Updated 2 years ago
- Quasilinear data representations for single-cell omics data analysis☆42May 4, 2023Updated 3 years ago
- resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…☆13Jan 30, 2023Updated 3 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆27Mar 3, 2020Updated 6 years ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆21Nov 17, 2024Updated last year
- Workshops on Computational Biology organized by our lab☆10Mar 25, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆33Jan 30, 2026Updated 5 months ago
- Highly scalable integration and classification of single-cell RNA sequencing data☆11Dec 27, 2020Updated 5 years ago
- A template for Python projects using cookiecutter☆13Jul 6, 2026Updated 2 weeks ago
- R functions for automation of biomarker discovery based on processing downstream of large LC-MS datasets from any peak picking software☆10May 17, 2017Updated 9 years ago
- Information-based dimensionality reduction☆30Dec 14, 2024Updated last year
- Group Technical Effects (GTE)☆16Oct 18, 2025Updated 9 months ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 5 years ago